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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3795-RA through 18771 annotations produced 1 hits



(CG3795):

Annotation Number : CG3795
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025378
Gbrowse : chrX:1602970-1604196 (-) // 100.0 //
Probeset : 1634953_at
Accessions : protein= NP_569939;, nucleotide= NM_130583;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0025378.
BDGP gene expression has embryonic in situ data for EG:9D2.4: 4 pix of staining in 1 body parts.
Homophila reports that CG3795 is a close match (1e-11) to human gene F10 (NP_000495), a gene associated with Factor X deficiency (3).
VDRC has 3 RNAi stocks for FBgn0025378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head5 ± 10 of 4 0.20Down
Eye3 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.20Down
Salivary gland14 ± 30 of 4 0.39Down
Crop7 ± 10 of 4 0.20Down
Midgut4 ± 10 of 4 0.10Down
Tubule12 ± 11 of 4 0.30Down
Hindgut6 ± 10 of 4 0.20Down
Heart4 ± 10 of 4 0.11Down
Fat body4 ± 30 of 4 0.13Down
Ovary2 ± 00 of 4 0.10Down
Testis273 ± 114 of 4 7.40Up
Male accessory glands9 ± 30 of 4 0.30Down
Virgin spermatheca3 ± 00 of 4 0.09Down
Mated spermatheca7 ± 20 of 4 0.20Down
Adult carcass11 ± 40 of 4 0.30Down
Larval CNS1 ± 00 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut4 ± 10 of 4 0.12Down
Larval tubule12 ± 01 of 4 0.30Down
Larval hindgut5 ± 10 of 4 0.16Down
Larval fat body27 ± 112 of 4 0.70None
Larval trachea4 ± 30 of 4 0.12Down
Larval carcass9 ± 00 of 4 0.25Down
S2 cells (growing)4 ± 10 of 4 0.11Down
Whole fly37 ± 24 of 4

Looking for CG3795-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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