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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3796-RA through 18771 annotations produced 1 hits



chrX:264063-265024 (+) // 100.0 // (achaete):

Annotation Number : CG3796
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638596_at
Accessions : protein= , nucleotide= NP_476824;
Pathway : "0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from direct assay /// 0006355 // regulation of transcription
FlyMine data for full length.
BioGrid reports that CG3796 interacts with CG6416 CG8346 CG10079 CG6494 CG6494 CG6494 CG6494 CG12296 CG1856 CG1856 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head2 10 of 4 0.40None
Eye2 00 of 4 0.58None
Thoracicoabdominal ganglion0 00 of 4 0.10Down
Salivary gland14 30 of 4 3.03Up
Crop5 21 of 4 1.10None
Midgut1 00 of 4 0.20Down
Tubule3 00 of 4 0.60Down
Hindgut3 10 of 4 0.60None
Heart3 00 of 4 0.68None
Fat body8 72 of 4 1.62None
Ovary0 00 of 4 0.10Down
Testis0 00 of 4 0.10Down
Male accessory glands3 10 of 4 0.70None
Virgin spermatheca5 10 of 4 1.02None
Mated spermatheca5 00 of 4 1.15None
Adult carcass3 20 of 4 0.70None
Larval CNS12 34 of 4 2.56Up
Larval Salivary gland6 21 of 4 1.22None
Larval midgut1 00 of 4 0.30Down
Larval tubule4 00 of 4 0.90None
Larval hindgut5 10 of 4 1.09None
Larval fat body2 00 of 4 0.40Down
Larval trachea1 10 of 4 0.37Down
Larval carcass7 11 of 4 1.57None
S2 cells (growing)1 00 of 4 0.39Down
Whole fly4 01 of 4

Looking for CG3796-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime