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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3803-RA through 18771 annotations produced 1 hits



(CG3803):

Annotation Number : CG3803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034938
Gbrowse : chr2R:19840039-19841538 (-) // 100.0 //
Probeset : 1626729_at
Accessions : protein= NP_611855;, nucleotide= NM_138011;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0016020 // membrane // in
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0034938.
Homophila reports that CG3803 is a close match (1e-92) to human gene COX15 (NP_004367), a gene associated with Cardiomyopathy, hypertrophic, early-onset fatal (3);Leigh syndrome due to cytochrome c oxidase deficiency, 256000 (3).
TRiP has 3 RNAi stocks for FBgn0034938 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034938 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain189 ± 74 of 4 2.20Up
Head88 ± 64 of 4 1.00None
Eye65 ± 14 of 4 0.75Down
Thoracicoabdominal ganglion250 ± 114 of 4 2.90Up
Salivary gland107 ± 84 of 4 1.23None
Crop102 ± 34 of 4 1.20Up
Midgut120 ± 104 of 4 1.40Up
Tubule175 ± 14 of 4 2.00Up
Hindgut119 ± 34 of 4 1.40Up
Heart80 ± 24 of 4 0.92None
Fat body67 ± 84 of 4 0.77Down
Ovary142 ± 54 of 4 1.60Up
Testis83 ± 34 of 4 1.00None
Male accessory glands74 ± 24 of 4 0.80Down
Virgin spermatheca82 ± 44 of 4 0.95None
Mated spermatheca95 ± 124 of 4 1.09None
Adult carcass67 ± 24 of 4 0.80Down
Larval CNS143 ± 64 of 4 1.64Up
Larval Salivary gland160 ± 114 of 4 1.83Up
Larval midgut93 ± 54 of 4 1.07None
Larval tubule174 ± 74 of 4 2.00Up
Larval hindgut134 ± 74 of 4 1.54Up
Larval fat body57 ± 14 of 4 0.70Down
Larval trachea93 ± 84 of 4 1.07None
Larval carcass65 ± 74 of 4 0.75None
S2 cells (growing)155 ± 14 of 4 1.78Up
Whole fly87 ± 34 of 4

Looking for CG3803-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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