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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3808-RA through 18771 annotations produced 1 hits



(CG3808):

Annotation Number : CG3808
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036838
Gbrowse : chr3L:18990974-18993708 (-) // 100.0 //
Probeset : 1641345_at
Accessions : protein= NP_649083;, nucleotide= NM_140826;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0036838.
BDGP gene expression has embryonic in situ data for CG3808: 14 pix of staining in 6 body parts.
TRiP has 1 RNAi stocks for FBgn0036838 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036838 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 14 of 4 0.40Down
Head22 ± 24 of 4 0.30Down
Eye8 ± 21 of 4 0.11Down
Thoracicoabdominal ganglion32 ± 34 of 4 0.40Down
Salivary gland36 ± 44 of 4 0.51Down
Crop47 ± 24 of 4 0.70Down
Midgut17 ± 24 of 4 0.20Down
Tubule26 ± 14 of 4 0.40Down
Hindgut37 ± 24 of 4 0.50Down
Heart21 ± 33 of 4 0.29Down
Fat body43 ± 114 of 4 0.60Down
Ovary128 ± 84 of 4 1.80Up
Testis11 ± 14 of 4 0.20Down
Male accessory glands53 ± 24 of 4 0.70Down
Virgin spermatheca26 ± 34 of 4 0.37Down
Mated spermatheca31 ± 24 of 4 0.44Down
Adult carcass31 ± 62 of 4 0.40Down
Larval CNS56 ± 54 of 4 0.78Down
Larval Salivary gland70 ± 74 of 4 0.98None
Larval midgut18 ± 04 of 4 0.25Down
Larval tubule28 ± 14 of 4 0.40Down
Larval hindgut37 ± 64 of 4 0.53Down
Larval fat body64 ± 74 of 4 0.90None
Larval trachea41 ± 104 of 4 0.57Down
Larval carcass45 ± 64 of 4 0.63Down
S2 cells (growing)101 ± 14 of 4 1.41Up
Whole fly72 ± 24 of 4

Looking for CG3808-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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