FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3815-RA through 18771 annotations produced 1 hits

(CG3815):

Annotation Number : CG3815
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029861
Gbrowse : chrX:6189488-6193006 (+) // 100.0 //
Probeset : 1629133_at
Accessions : protein= NP_572311;, nucleotide= NM_132083;
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0029861.
BDGP gene expression has embryonic in situ data for CG3815: 4 pix of staining in 1 body parts.
Homophila reports that CG3815 is a close match (3e-11) to human gene AIRE;APECED (NP_000374), a gene associated with Autoimmune polyglandular disease, type I, 240300 (3).
BioGrid reports that CG3815 interacts with CG7605 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	61 ± 3	4 of 4	1.00	None
Head	27 ± 1	4 of 4	0.40	Down
Eye	49 ± 4	4 of 4	0.78	None
Thoracicoabdominal ganglion	37 ± 2	4 of 4	0.60	Down
Salivary gland	48 ± 3	4 of 4	0.76	Down
Crop	26 ± 4	4 of 4	0.40	Down
Midgut	20 ± 1	3 of 4	0.30	Down
Tubule	16 ± 0	3 of 4	0.30	Down
Hindgut	24 ± 1	4 of 4	0.40	Down
Heart	28 ± 1	3 of 4	0.45	Down
Fat body	19 ± 1	4 of 4	0.32	Down
Ovary	145 ± 8	4 of 4	2.30	Up
Testis	46 ± 2	4 of 4	0.70	Down
Male accessory glands	47 ± 4	4 of 4	0.80	None
Virgin spermatheca	21 ± 0	4 of 4	0.35	Down
Mated spermatheca	28 ± 1	4 of 4	0.45	Down
Adult carcass	18 ± 2	3 of 4	0.30	Down
Larval CNS	75 ± 5	4 of 4	1.20	None
Larval Salivary gland	63 ± 4	4 of 4	1.01	None
Larval midgut	25 ± 5	3 of 4	0.40	Down
Larval tubule	19 ± 1	3 of 4	0.30	Down
Larval hindgut	29 ± 3	4 of 4	0.47	Down
Larval fat body	23 ± 4	3 of 4	0.40	Down
Larval trachea	72 ± 1	4 of 4	1.16	None
Larval carcass	37 ± 2	4 of 4	0.60	Down
S2 cells (growing)	37 ± 1	4 of 4	0.60	Down
Whole fly	62 ± 4	4 of 4

Looking for CG3815-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720