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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3817-RA through 18771 annotations produced 1 hits



(CG3817):

Annotation Number : CG3817
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038275
Gbrowse : chr3R:10724434-10725341 (+) // 100.0 //
Probeset : 1629008_at
Accessions : protein= NP_650405;, nucleotide= NM_142148;
FlyMine data for FBgn0038275.
VDRC has 2 RNAi stocks for FBgn0038275 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 34 of 4 0.80None
Head36 14 of 4 0.50Down
Eye29 24 of 4 0.40Down
Thoracicoabdominal ganglion42 24 of 4 0.60Down
Salivary gland46 24 of 4 0.64Down
Crop40 44 of 4 0.50Down
Midgut46 24 of 4 0.60Down
Tubule27 33 of 4 0.40Down
Hindgut40 14 of 4 0.60Down
Heart30 34 of 4 0.41Down
Fat body43 44 of 4 0.59Down
Ovary131 14 of 4 1.80Up
Testis38 44 of 4 0.50Down
Male accessory glands69 24 of 4 0.90None
Virgin spermatheca26 04 of 4 0.36Down
Mated spermatheca31 24 of 4 0.43Down
Adult carcass29 04 of 4 0.40Down
Larval CNS136 74 of 4 1.86Up
Larval Salivary gland70 74 of 4 0.96None
Larval midgut30 14 of 4 0.41Down
Larval tubule27 14 of 4 0.40Down
Larval hindgut44 74 of 4 0.61Down
Larval fat body27 24 of 4 0.40Down
Larval trachea124 144 of 4 1.69Up
Larval carcass65 54 of 4 0.89None
S2 cells (growing)106 34 of 4 1.46Up
Whole fly73 74 of 4

Looking for CG3817-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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