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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3818-RA through 18771 annotations produced 1 hits



CG3818 (Cpr30B):

Annotation Number : CG3818
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032125
Gbrowse : chr2L:9542946-9543478 (+) // 100.0 //
Probeset : 1631773_at
Accessions : protein= NP_609295;, nucleotide= NM_135451;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008011
FlyMine data for FBgn0032125.
VDRC has 2 RNAi stocks for FBgn0032125 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20None
Head4 10 of 4 0.80None
Eye4 10 of 4 0.68None
Thoracicoabdominal ganglion1 00 of 4 0.20None
Salivary gland7 50 of 4 1.31None
Crop5 20 of 4 0.90None
Midgut4 20 of 4 0.80None
Tubule4 00 of 4 0.70Down
Hindgut2 00 of 4 0.40None
Heart5 10 of 4 0.95None
Fat body8 40 of 4 1.50None
Ovary3 10 of 4 0.60None
Testis1 00 of 4 0.20None
Male accessory glands2 00 of 4 0.40None
Virgin spermatheca3 10 of 4 0.59None
Mated spermatheca5 20 of 4 0.98None
Adult carcass4 10 of 4 0.80None
Larval CNS6 10 of 4 1.07None
Larval Salivary gland2 00 of 4 0.38None
Larval midgut8 10 of 4 1.41None
Larval tubule3 10 of 4 0.50None
Larval hindgut4 10 of 4 0.81None
Larval fat body2 00 of 4 0.40None
Larval trachea4 20 of 4 0.83None
Larval carcass2 00 of 4 0.46None
S2 cells (growing)1 00 of 4 0.29None
Whole fly5 10 of 4

Looking for CG3818-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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