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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3819-RA through 18771 annotations produced 1 hits


(CG3819):

Annotation Number : CG3819
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036833
Gbrowse : chr3L:18913620-18915206 (-) // 100.0 //
Probeset : 1629184_at
Accessions : protein= NP_649078;, nucleotide= NM_140821;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0036833.
BDGP gene expression has embryonic in situ data for CG3819: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036833 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head98 ± 872 of 4 0.30None
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.01Down
Crop10 ± 81 of 4 0.00Down
Midgut3844 ± 494 of 411.60Up
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body1 ± 00 of 4 0.00Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.01Down
Mated spermatheca3 ± 20 of 4 0.01Down
Adult carcass32 ± 241 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut5196 ± 3134 of 415.65Up
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.01Down
Larval fat body7 ± 51 of 4 0.00Down
Larval trachea14 ± 251 of 4 0.04Down
Larval carcass0 ± 00 of 4 0.00Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly332 ± 924 of 4

Looking for CG3819-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime