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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3822-RA through 18771 annotations produced 1 hits



(CG3822):

Annotation Number : CG3822
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038837
Gbrowse : chr3R:16685908-16691951 (-) // 100.0 //
Probeset : 1634462_at
Accessions : protein= NP_650925;, nucleotide= NM_142668;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0038837.
Homophila reports that CG3822 is a close match (6e-168) to human gene GLUR3;GRIA3;MRX94 (NP_000819), a gene associated with Mental retardation, X-linked 94, 300699 (3).
TRiP has 1 RNAi stocks for FBgn0038837 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038837 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain177 ± 224 of 428.70Up
Head24 ± 14 of 4 3.90Up
Eye16 ± 14 of 4 2.62Up
Thoracicoabdominal ganglion62 ± 14 of 410.10Up
Salivary gland2 ± 00 of 4 0.37Down
Crop3 ± 10 of 4 0.60None
Midgut5 ± 00 of 4 0.80None
Tubule3 ± 00 of 4 0.50Down
Hindgut2 ± 00 of 4 0.30Down
Heart3 ± 01 of 4 0.49Down
Fat body9 ± 13 of 4 1.45None
Ovary2 ± 10 of 4 0.30Down
Testis2 ± 01 of 4 0.50Down
Male accessory glands2 ± 00 of 4 0.40Down
Virgin spermatheca4 ± 11 of 4 0.66None
Mated spermatheca3 ± 10 of 4 0.57None
Adult carcass2 ± 10 of 4 0.50None
Larval CNS120 ± 144 of 419.56Up
Larval Salivary gland2 ± 10 of 4 0.41Down
Larval midgut4 ± 00 of 4 0.77None
Larval tubule1 ± 00 of 4 0.30Down
Larval hindgut2 ± 00 of 4 0.36Down
Larval fat body2 ± 00 of 4 0.40Down
Larval trachea2 ± 20 of 4 0.39None
Larval carcass2 ± 00 of 4 0.34Down
S2 cells (growing)1 ± 00 of 4 0.24Down
Whole fly6 ± 03 of 4

Looking for CG3822-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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