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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3825-RA through 18771 annotations produced 1 hits



(CG3825):

Annotation Number : CG3825
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034948
Gbrowse : chr2R:19863123-19864801 (-) // 100.0 //
Probeset : 1638701_at
Accessions : protein= NP_611863;, nucleotide= NM_138019;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034948.
BioGrid reports that CG3825 interacts with CG5225 .
TRiP has 1 RNAi stocks for FBgn0034948 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034948 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain595 ± 94 of 4 1.70Up
Head468 ± 134 of 4 1.30Up
Eye878 ± 324 of 4 2.44Up
Thoracicoabdominal ganglion596 ± 134 of 4 1.70Up
Salivary gland472 ± 84 of 4 1.31Up
Crop454 ± 124 of 4 1.30Up
Midgut410 ± 54 of 4 1.10Up
Tubule472 ± 134 of 4 1.30Up
Hindgut442 ± 74 of 4 1.20Up
Heart346 ± 84 of 4 0.96None
Fat body320 ± 114 of 4 0.89Down
Ovary474 ± 114 of 4 1.30Up
Testis513 ± 104 of 4 1.40Up
Male accessory glands236 ± 104 of 4 0.70Down
Virgin spermatheca404 ± 264 of 4 1.12None
Mated spermatheca339 ± 234 of 4 0.94None
Adult carcass427 ± 34 of 4 1.20Up
Larval CNS341 ± 84 of 4 0.95None
Larval Salivary gland268 ± 114 of 4 0.75Down
Larval midgut372 ± 34 of 4 1.03None
Larval tubule438 ± 54 of 4 1.20Up
Larval hindgut280 ± 54 of 4 0.78Down
Larval fat body283 ± 244 of 4 0.80Down
Larval trachea273 ± 154 of 4 0.76Down
Larval carcass249 ± 104 of 4 0.69Down
S2 cells (growing)473 ± 44 of 4 1.31Up
Whole fly360 ± 64 of 4

Looking for CG3825-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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