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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3830-RA through 18771 annotations produced 2 hits



vestigial (vg):

Annotation Number : RE02247
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003975
Gbrowse : chr2R:8772145-8773934 (+) // 98.79 //
Probeset : 1641470_s_at
Accessions : protein= NP_523723;, nucleotide= NM_078999;
Pathway : imaginal disc // inferred from mutant phenotype /// 0007472 // wing disc morphogenesis // inferred from mutant phenotyp
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0
FlyMine data for FBgn0003975.
BDGP gene expression has embryonic in situ data for vg: 4 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0003975 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003975 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 20 of 4 2.20None
Head0 00 of 4 0.20None
Eye0 00 of 4 0.28None
Thoracicoabdominal ganglion11 21 of 4 3.70Up
Salivary gland4 20 of 4 1.49None
Crop0 00 of 4 0.20None
Midgut1 00 of 4 0.40None
Tubule2 00 of 4 0.70None
Hindgut0 00 of 4 0.30None
Heart1 00 of 4 0.37None
Fat body1 00 of 4 0.39None
Ovary0 00 of 4 0.10None
Testis0 00 of 4 0.30None
Male accessory glands1 00 of 4 0.30None
Virgin spermatheca35 63 of 411.33Up
Mated spermatheca56 124 of 417.76Up
Adult carcass21 71 of 4 7.00None
Larval CNS1 00 of 4 0.44None
Larval Salivary gland1 00 of 4 0.31None
Larval midgut0 00 of 4 0.22None
Larval tubule0 00 of 4 0.20None
Larval hindgut0 00 of 4 0.20None
Larval fat body1 00 of 4 0.50None
Larval trachea0 00 of 4 0.21None
Larval carcass0 00 of 4 0.31None
S2 cells (growing)0 00 of 4 0.13None
Whole fly3 10 of 4



vestigial (vg):

Annotation Number : CG3830
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003975
Gbrowse : chr2R:8771793-8786900 (+) // 100.0 //
Probeset : 1623484_at
Accessions : protein= NP_523723;, nucleotide= NM_078999;
Pathway : imaginal disc // inferred from mutant phenotype /// 0007472 // wing disc morphogenesis // inferred from mutant phenotyp
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0
FlyMine data for FBgn0003975.
BDGP gene expression has embryonic in situ data for vg: 4 pix of staining in 3 body parts.
BioGrid reports that CG3830 interacts with CG8376 CG3352 CG8544 CG8544 CG8544 CG8544 CG8544 CG8544 CG14026 CG3936 CG3936 CG3936 CG6127 CG6127 CG3497 CG3497 CG1903 CG10334 CG4889 CG4889 CG4889 CG18001 .
TRiP has 1 RNAi stocks for FBgn0003975 available for purchase.
VDRC has 1 RNAi stocks for FBgn0003975 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 14 of 4 2.20Up
Head6 03 of 4 0.40Down
Eye6 11 of 4 0.42Down
Thoracicoabdominal ganglion46 14 of 4 3.00Up
Salivary gland8 10 of 4 0.58None
Crop4 00 of 4 0.30Down
Midgut2 10 of 4 0.10Down
Tubule5 00 of 4 0.40Down
Hindgut3 00 of 4 0.20Down
Heart0 00 of 4 0.06Down
Fat body11 32 of 4 0.77None
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.10Down
Male accessory glands2 10 of 4 0.20Down
Virgin spermatheca185 144 of 412.13Up
Mated spermatheca243 314 of 415.88Up
Adult carcass54 54 of 4 3.60Up
Larval CNS47 74 of 4 3.07Up
Larval Salivary gland5 11 of 4 0.32Down
Larval midgut2 10 of 4 0.18Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.10Down
Larval fat body2 00 of 4 0.20Down
Larval trachea5 32 of 4 0.36Down
Larval carcass13 23 of 4 0.86None
S2 cells (growing)3 00 of 4 0.25Down
Whole fly15 24 of 4

Looking for CG3830-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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