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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3835-RB through 18771 annotations produced 1 hits



(CG3835):

Annotation Number : CG3835
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023507
Gbrowse : chrX:2035520-2038972 (+) // 100.0 //
Probeset : 1637491_s_at
Accessions : protein= NP_569982; /// NP_726794; /// NP_726795;, nucleotide= NM_130626; /// NM_166929; /// NM_166930;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred
FlyMine data for FBgn0023507.
BDGP gene expression has embryonic in situ data for EG:87B1.3: 18 pix of staining in 8 body parts.
Homophila reports that CG3835 is a close match (9e-14) to human gene ADHAPS;AGPS (NP_003650), a gene associated with Rhizomelic chondrodysplasia punctata, type 3, 600121 (3).
VDRC has 2 RNAi stocks for FBgn0023507 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain138 ± 24 of 4 0.30Down
Head812 ± 614 of 4 1.60Up
Eye441 ± 434 of 4 0.85None
Thoracicoabdominal ganglion235 ± 94 of 4 0.50Down
Salivary gland1073 ± 714 of 4 2.07Up
Crop738 ± 114 of 4 1.40Up
Midgut1281 ± 414 of 4 2.50Up
Tubule5857 ± 564 of 411.30Up
Hindgut1118 ± 394 of 4 2.20Up
Heart1363 ± 844 of 4 2.63Up
Fat body1787 ± 464 of 4 3.45Up
Ovary47 ± 34 of 4 0.10Down
Testis14 ± 13 of 4 0.00Down
Male accessory glands347 ± 424 of 4 0.70Down
Virgin spermatheca2814 ± 834 of 4 5.43Up
Mated spermatheca2193 ± 564 of 4 4.23Up
Adult carcass1486 ± 644 of 4 2.90Up
Larval CNS65 ± 154 of 4 0.13Down
Larval Salivary gland230 ± 304 of 4 0.44Down
Larval midgut1951 ± 414 of 4 3.76Up
Larval tubule2167 ± 1904 of 4 4.20Up
Larval hindgut753 ± 434 of 4 1.45Up
Larval fat body88 ± 114 of 4 0.20Down
Larval trachea146 ± 244 of 4 0.28Down
Larval carcass652 ± 264 of 4 1.26Up
S2 cells (growing)170 ± 54 of 4 0.33Down
Whole fly518 ± 334 of 4

Looking for CG3835-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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