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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3836-RA through 18771 annotations produced 1 hits



alpha transcript (stwl):

Annotation Number : CG3836
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003459
Gbrowse : chr3L:14396609-14403023 (-) // 100.0 //
Probeset : 1623359_at
Accessions : protein= NP_524068;, nucleotide= NM_079344;
Pathway : 0005634 // nucleus // non-traceable author statement
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor acti
FlyMine data for FBgn0003459.
BDGP gene expression has embryonic in situ data for stwl: 27 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0003459 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003459 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 0.50Down
Head13 ± 33 of 4 0.40Down
Eye9 ± 12 of 4 0.30Down
Thoracicoabdominal ganglion14 ± 24 of 4 0.40Down
Salivary gland11 ± 31 of 4 0.35Down
Crop9 ± 23 of 4 0.30Down
Midgut13 ± 04 of 4 0.40Down
Tubule16 ± 04 of 4 0.50Down
Hindgut11 ± 14 of 4 0.40Down
Heart7 ± 11 of 4 0.24Down
Fat body9 ± 12 of 4 0.29Down
Ovary95 ± 54 of 4 2.90Up
Testis55 ± 14 of 4 1.70Up
Male accessory glands17 ± 24 of 4 0.50Down
Virgin spermatheca13 ± 24 of 4 0.41Down
Mated spermatheca9 ± 23 of 4 0.28Down
Adult carcass11 ± 22 of 4 0.40Down
Larval CNS37 ± 64 of 4 1.14None
Larval Salivary gland12 ± 14 of 4 0.37Down
Larval midgut8 ± 10 of 4 0.27Down
Larval tubule8 ± 03 of 4 0.30Down
Larval hindgut10 ± 23 of 4 0.31Down
Larval fat body10 ± 51 of 4 0.30Down
Larval trachea15 ± 14 of 4 0.46Down
Larval carcass10 ± 12 of 4 0.31Down
S2 cells (growing)46 ± 34 of 4 1.42Up
Whole fly33 ± 44 of 4

Looking for CG3836-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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