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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3837-RA through 18771 annotations produced 1 hits



(CG3837):

Annotation Number : CG3837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038279
Gbrowse : chr3R:10744401-10748027 (+) // 100.0 //
Probeset : 1630380_at
Accessions : protein= NP_650408;, nucleotide= NM_142151;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0004714 // transmembrane receptor protein tyrosine kinase activity // inferred from electronic annotation /// 0005010 //
FlyMine data for FBgn0038279.
Homophila reports that CG3837 is a close match (1e-12) to human gene EGFR (NP_958440), a gene associated with Adenocarcinoma of lung, response to tyrosine kinase inhibitor in, 211980 (3);Nonsmall cell lung cancer, response to tyrosine kinase inhibitor in, 211980 (3);{Nonsmall cell lung cancer, susceptibility to}, 211980 (3).
TRiP has 1 RNAi stocks for FBgn0038279 available for purchase.
VDRC has 3 RNAi stocks for FBgn0038279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain211 64 of 4 7.80Up
Head116 24 of 4 4.30Up
Eye83 74 of 4 3.06Up
Thoracicoabdominal ganglion260 144 of 4 9.50Up
Salivary gland7 30 of 4 0.27Down
Crop5 20 of 4 0.20Down
Midgut15 11 of 4 0.60Down
Tubule5 00 of 4 0.20Down
Hindgut47 14 of 4 1.70Up
Heart5 11 of 4 0.19Down
Fat body8 31 of 4 0.29Down
Ovary43 14 of 4 1.60Up
Testis21 24 of 4 0.80None
Male accessory glands28 23 of 4 1.00None
Virgin spermatheca6 10 of 4 0.22Down
Mated spermatheca7 11 of 4 0.26Down
Adult carcass22 13 of 4 0.80None
Larval CNS128 154 of 4 4.73Up
Larval Salivary gland2 00 of 4 0.08Down
Larval midgut18 22 of 4 0.68Down
Larval tubule5 10 of 4 0.20Down
Larval hindgut15 13 of 4 0.58Down
Larval fat body9 30 of 4 0.30Down
Larval trachea3 20 of 4 0.11Down
Larval carcass15 14 of 4 0.55Down
S2 cells (growing)2 00 of 4 0.08Down
Whole fly27 24 of 4

Looking for CG3837-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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