FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3842-RA through 18771 annotations produced 1 hits

chrX:6233559-6237396 (+) // 100.0 // ():

Annotation Number : CG3842
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633814_at
Accessions : protein= , nucleotide= NP_572316; /// NP_996356;
Pathway : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
FlyMine data for full length.
Homophila reports that CG3842 is a close match (3e-44) to human gene FOR;WWOX (NP_057457), a gene associated with Esophageal squamous cell carcinoma, 133239 (3).
BioGrid reports that CG3842 interacts with CG5144 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 1	2 of 4	0.10	Down
Head	228 ± 15	4 of 4	2.70	Up
Eye	67 ± 10	4 of 4	0.81	None
Thoracicoabdominal ganglion	8 ± 2	0 of 4	0.10	Down
Salivary gland	12 ± 4	0 of 4	0.15	Down
Crop	298 ± 16	4 of 4	3.60	Up
Midgut	9 ± 2	0 of 4	0.10	Down
Tubule	5 ± 1	0 of 4	0.10	Down
Hindgut	481 ± 9	4 of 4	5.80	Up
Heart	27 ± 3	4 of 4	0.33	Down
Fat body	48 ± 12	4 of 4	0.57	Down
Ovary	67 ± 5	4 of 4	0.80	None
Testis	14 ± 0	1 of 4	0.20	Down
Male accessory glands	4 ± 1	0 of 4	0.10	Down
Virgin spermatheca	17 ± 2	4 of 4	0.21	Down
Mated spermatheca	35 ± 2	4 of 4	0.43	Down
Adult carcass	257 ± 19	4 of 4	3.10	Up
Larval CNS	4 ± 2	0 of 4	0.05	Down
Larval Salivary gland	7 ± 0	1 of 4	0.09	Down
Larval midgut	3 ± 0	0 of 4	0.04	Down
Larval tubule	7 ± 2	0 of 4	0.10	Down
Larval hindgut	206 ± 19	4 of 4	2.47	Up
Larval fat body	162 ± 14	4 of 4	1.90	Up
Larval trachea	44 ± 12	4 of 4	0.53	Down
Larval carcass	112 ± 23	4 of 4	1.34	None
S2 cells (growing)	12 ± 1	0 of 4	0.15	Down
Whole fly	83 ± 11	4 of 4

Looking for CG3842-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720