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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3847-RB through 18771 annotations produced 1 hits



(CG3847):

Annotation Number : CG3847
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029867
Gbrowse : chrX:6241125-6243284 (+) // 100.0 //
Probeset : 1630369_a_at
Accessions : protein= NP_572317;, nucleotide= NM_132089;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0029867.
BDGP gene expression has embryonic in situ data for CG3847: 17 pix of staining in 17 body parts.
Homophila reports that CG3847 is a close match (6e-11) to human gene MRX92;ZNF674 (NP_001034980), a gene associated with Mental retardation, X-linked-92 (3).
BioGrid reports that CG3847 interacts with CG4617 CG7386 CG8189 CG8415 CG8745 CG9588 .
VDRC has 1 RNAi stocks for FBgn0029867 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain339 84 of 4 1.20None
Head191 144 of 4 0.70Down
Eye157 54 of 4 0.54Down
Thoracicoabdominal ganglion231 44 of 4 0.80Down
Salivary gland285 254 of 4 0.99None
Crop208 74 of 4 0.70Down
Midgut202 114 of 4 0.70Down
Tubule210 114 of 4 0.70Down
Hindgut207 64 of 4 0.70Down
Heart154 74 of 4 0.54Down
Fat body185 124 of 4 0.64Down
Ovary505 124 of 4 1.70Up
Testis31 14 of 4 0.10Down
Male accessory glands211 64 of 4 0.70Down
Virgin spermatheca186 54 of 4 0.65Down
Mated spermatheca210 114 of 4 0.73Down
Adult carcass162 44 of 4 0.60Down
Larval CNS449 344 of 4 1.56Up
Larval Salivary gland487 164 of 4 1.68Up
Larval midgut223 174 of 4 0.77Down
Larval tubule247 64 of 4 0.90None
Larval hindgut255 74 of 4 0.88None
Larval fat body140 84 of 4 0.50Down
Larval trachea378 484 of 4 1.31Up
Larval carcass325 194 of 4 1.12None
S2 cells (growing)274 74 of 4 0.95None
Whole fly289 184 of 4

Looking for CG3847-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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