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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3851-RA through 18771 annotations produced 1 hits



Odd-skipped (odd):

Annotation Number : CG3851
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002985
Gbrowse : chr2L:3604221-3606748 (-) // 100.0 //
Probeset : 1625850_at
Accessions : protein= NP_722922;, nucleotide= NM_164546;
Pathway : DNA-dependent // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
FlyMine data for FBgn0002985.
BDGP gene expression has embryonic in situ data for odd: 80 pix of staining in 36 body parts.
Homophila reports that CG3851 is a close match (2e-11) to human gene BCD1;COPEB;KLF6;ZF9 (NP_001291), a gene associated with Gastric cancer, somatic, 137215 (3);Prostate cancer, somatic, 176807 (3).
BioGrid reports that CG3851 interacts with CG4276 CG4755 CG5555 CG5674 CG7417 CG7570 CG9572 .
TRiP has 2 RNAi stocks for FBgn0002985 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002985 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 12 of 4 0.20Down
Head10 04 of 4 0.20Down
Eye15 04 of 4 0.36Down
Thoracicoabdominal ganglion6 10 of 4 0.20Down
Salivary gland6 10 of 4 0.15Down
Crop7 01 of 4 0.20Down
Midgut327 94 of 4 7.70Up
Tubule35 54 of 4 0.80None
Hindgut291 114 of 4 6.80Up
Heart170 64 of 4 3.99Up
Fat body10 52 of 4 0.24Down
Ovary3 10 of 4 0.10Down
Testis2 00 of 4 0.10Down
Male accessory glands5 10 of 4 0.10Down
Virgin spermatheca2 10 of 4 0.06Down
Mated spermatheca4 11 of 4 0.10Down
Adult carcass21 23 of 4 0.50Down
Larval CNS20 24 of 4 0.47Down
Larval Salivary gland5 00 of 4 0.12Down
Larval midgut30 44 of 4 0.71Down
Larval tubule85 84 of 4 2.00Up
Larval hindgut271 174 of 4 6.37Up
Larval fat body14 13 of 4 0.30Down
Larval trachea18 34 of 4 0.43Down
Larval carcass51 14 of 4 1.21Up
S2 cells (growing)4 01 of 4 0.11Down
Whole fly42 24 of 4

Looking for CG3851-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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