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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3853-RA through 18771 annotations produced 1 hits



Glucose transporter-like (Glut3):

Annotation Number : CG3853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015230
Gbrowse : chr3R:12614032-12615745 (+) // 100.0 //
Probeset : 1627217_at
Accessions : protein= NP_536732;, nucleotide= NM_080484;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter
FlyMine data for FBgn0015230.
BDGP gene expression has embryonic in situ data for Glut3: 4 pix of staining in 1 body parts.
Homophila reports that CG3853 is a close match (6e-11) to human gene GLUT9;SLC2A9;UAQTL2 (NP_064425), a gene associated with {Uric acid concentration, serum, QTL 2}, 612076 (3).
VDRC has 2 RNAi stocks for FBgn0015230 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.10Down
Salivary gland6 ± 20 of 4 0.23Down
Crop4 ± 10 of 4 0.20Down
Midgut2 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.20Down
Heart1 ± 10 of 4 0.07Down
Fat body3 ± 20 of 4 0.12Down
Ovary1 ± 10 of 4 0.10Down
Testis408 ± 154 of 414.80Up
Male accessory glands9 ± 30 of 4 0.30Down
Virgin spermatheca8 ± 01 of 4 0.29Down
Mated spermatheca4 ± 00 of 4 0.15Down
Adult carcass5 ± 10 of 4 0.20Down
Larval CNS4 ± 20 of 4 0.15Down
Larval Salivary gland5 ± 10 of 4 0.18Down
Larval midgut5 ± 10 of 4 0.18Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut5 ± 10 of 4 0.19Down
Larval fat body49 ± 203 of 4 1.80None
Larval trachea7 ± 21 of 4 0.27Down
Larval carcass6 ± 00 of 4 0.22Down
S2 cells (growing)2 ± 00 of 4 0.09Down
Whole fly27 ± 14 of 4

Looking for CG3853-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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