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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3856-RB through 18771 annotations produced 2 hits



octopamine receptor (Oamb):

Annotation Number : CT35899
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024944
Gbrowse : chr3R:16531674-16540263 (-) // 100.0 //
Probeset : 1640359_s_at
Accessions : protein= NP_524669; /// NP_732541; /// NP_732542;, nucleotide= NM_079930; /// NM_169913; /// NM_169914;
Pathway : coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007211 // octopamine or tyramine signali
Interpro : 0005886 // plasma membrane // non-traceable author statement /// 0005887 // integral to plasma membrane // inferred by c
FlyMine data for FBgn0024944.
TRiP has 2 RNAi stocks for FBgn0024944 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024944 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 24 of 4 6.40Up
Head8 ± 10 of 4 3.40Up
Eye3 ± 10 of 4 1.16None
Thoracicoabdominal ganglion6 ± 10 of 4 2.30None
Salivary gland5 ± 10 of 4 2.26None
Crop2 ± 10 of 4 0.80None
Midgut0 ± 00 of 4 0.30None
Tubule2 ± 00 of 4 0.80None
Hindgut3 ± 10 of 4 1.30None
Heart1 ± 00 of 4 0.50None
Fat body2 ± 10 of 4 1.02None
Ovary4 ± 10 of 4 1.90None
Testis0 ± 00 of 4 0.30None
Male accessory glands6 ± 20 of 4 2.60None
Virgin spermatheca1 ± 00 of 4 0.38None
Mated spermatheca1 ± 00 of 4 0.51None
Adult carcass3 ± 10 of 4 1.10None
Larval CNS2 ± 20 of 4 1.13None
Larval Salivary gland3 ± 10 of 4 1.15None
Larval midgut1 ± 00 of 4 0.59None
Larval tubule1 ± 00 of 4 0.60None
Larval hindgut1 ± 00 of 4 0.43None
Larval fat body3 ± 10 of 4 1.30None
Larval trachea1 ± 10 of 4 0.75None
Larval carcass2 ± 00 of 4 1.04None
S2 cells (growing)3 ± 11 of 4 1.30None
Whole fly2 ± 11 of 4



octopamine receptor (Oamb):

Annotation Number : CG3856
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024944
Gbrowse : chr3R:16518126-16540263 (-) // 100.0 //
Probeset : 1635328_at
Accessions : protein= NP_524669; /// NP_732541; /// NP_732542;, nucleotide= NM_079930; /// NM_169913; /// NM_169914;
Pathway : coupled to cAMP nucleotide second messenger // inferred from direct assay /// 0007211 // octopamine or tyramine signali
Interpro : 0005886 // plasma membrane // non-traceable author statement /// 0005887 // integral to plasma membrane // inferred by c
FlyMine data for FBgn0024944.
Homophila reports that CG3856 is a close match (2e-11) to human gene OPRM1 (NP_001008505), a gene associated with [Response to morphine-6-glucuronide] (3);{Epilepsy, idiopathic generalized, susceptibility to}, 600669 (3).
TRiP has 2 RNAi stocks for FBgn0024944 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024944 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain126 ± 34 of 4 3.10Up
Head50 ± 24 of 4 1.20Up
Eye48 ± 44 of 4 1.17None
Thoracicoabdominal ganglion30 ± 04 of 4 0.70Down
Salivary gland26 ± 33 of 4 0.64Down
Crop8 ± 21 of 4 0.20Down
Midgut5 ± 10 of 4 0.10Down
Tubule6 ± 01 of 4 0.20Down
Hindgut12 ± 13 of 4 0.30Down
Heart5 ± 11 of 4 0.14Down
Fat body15 ± 64 of 4 0.37Down
Ovary57 ± 54 of 4 1.40None
Testis16 ± 14 of 4 0.40Down
Male accessory glands31 ± 64 of 4 0.80None
Virgin spermatheca60 ± 24 of 4 1.48Up
Mated spermatheca71 ± 34 of 4 1.72Up
Adult carcass19 ± 24 of 4 0.50Down
Larval CNS20 ± 24 of 4 0.50Down
Larval Salivary gland7 ± 11 of 4 0.18Down
Larval midgut5 ± 11 of 4 0.13Down
Larval tubule5 ± 02 of 4 0.10Down
Larval hindgut5 ± 01 of 4 0.13Down
Larval fat body8 ± 12 of 4 0.20Down
Larval trachea13 ± 53 of 4 0.32Down
Larval carcass9 ± 12 of 4 0.23Down
S2 cells (growing)2 ± 00 of 4 0.07Down
Whole fly41 ± 14 of 4

Looking for CG3856-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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