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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3858-RA through 18771 annotations produced 1 hits



glide glide2 (gcm2):

Annotation Number : CG3858
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0019809
Gbrowse : chr2L:9608537-9612535 (+) // 100.0 //
Probeset : 1633591_at
Accessions : protein= NP_609302; /// NP_995669;, nucleotide= NM_135458; /// NM_205947;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred fr
Interpro : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0019809.
Homophila reports that CG3858 is a close match (1e-52) to human gene GCMB (NP_004743), a gene associated with Hypoparathyroidism, familial isolated, 146200 (3).
BioGrid reports that CG3858 interacts with CG4237 CG4700 CG5804 CG8189 CG8854 CG8942 CG9539 CG12245 .
TRiP has 2 RNAi stocks for FBgn0019809 available for purchase.
VDRC has 2 RNAi stocks for FBgn0019809 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 03 of 4 1.90None
Head1 ± 00 of 4 0.80None
Eye3 ± 20 of 4 1.65None
Thoracicoabdominal ganglion2 ± 10 of 4 0.90None
Salivary gland3 ± 10 of 4 1.51None
Crop1 ± 00 of 4 0.70None
Midgut2 ± 10 of 4 1.00None
Tubule1 ± 00 of 4 0.50Down
Hindgut0 ± 00 of 4 0.30None
Heart2 ± 00 of 4 1.17None
Fat body2 ± 20 of 4 1.22None
Ovary1 ± 00 of 4 0.80None
Testis5 ± 00 of 4 2.50None
Male accessory glands0 ± 00 of 4 0.30None
Virgin spermatheca2 ± 00 of 4 1.11None
Mated spermatheca1 ± 00 of 4 0.59None
Adult carcass1 ± 00 of 4 0.80None
Larval CNS24 ± 54 of 410.59Up
Larval Salivary gland3 ± 10 of 4 1.68None
Larval midgut0 ± 00 of 4 0.30None
Larval tubule0 ± 00 of 4 0.30None
Larval hindgut1 ± 10 of 4 0.66None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea3 ± 31 of 4 1.47None
Larval carcass2 ± 10 of 4 1.17None
S2 cells (growing)2 ± 00 of 4 1.14None
Whole fly2 ± 10 of 4

Looking for CG3858-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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