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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3862-RA through 18771 annotations produced 1 hits



RCC GEF-related protein (CG3862):

Annotation Number : CG3862
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031286
Gbrowse : chr2L:824325-825810 (-) // 100.0 //
Probeset : 1639296_at
Accessions : protein= NP_608550;, nucleotide= NM_134706;
FlyMine data for FBgn0031286.
Homophila reports that CG3862 is a close match (1e-14) to human gene COD1;CRD;RP15;RP3;RPGR (NP_001030025), a gene associated with Cone dystrophy-1, 304020 (3);Cone-rod dystrophy, 300029 (3);Macular degeneration, X-linked atrophic (3);Retinitis pigmentosa, X-linked with deafness and sinorespiratory infections, 300455 (3);Retinitis pigmentosa, X-linked, with recurrent respiratory infections, 300455 (3);Retinitis pigmentosa-3, 300389 (3).
VDRC has 2 RNAi stocks for FBgn0031286 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 ± 24 of 4 2.30Up
Head45 ± 24 of 4 1.20None
Eye61 ± 34 of 4 1.58Up
Thoracicoabdominal ganglion105 ± 34 of 4 2.70Up
Salivary gland43 ± 44 of 4 1.12None
Crop44 ± 34 of 4 1.10None
Midgut58 ± 54 of 4 1.50Up
Tubule70 ± 24 of 4 1.80Up
Hindgut54 ± 54 of 4 1.40None
Heart43 ± 34 of 4 1.11None
Fat body23 ± 93 of 4 0.60Down
Ovary71 ± 24 of 4 1.80Up
Testis17 ± 14 of 4 0.50Down
Male accessory glands44 ± 24 of 4 1.10None
Virgin spermatheca32 ± 24 of 4 0.83None
Mated spermatheca28 ± 24 of 4 0.74Down
Adult carcass35 ± 34 of 4 0.90None
Larval CNS84 ± 14 of 4 2.17Up
Larval Salivary gland55 ± 54 of 4 1.43Up
Larval midgut35 ± 34 of 4 0.91None
Larval tubule48 ± 34 of 4 1.20None
Larval hindgut48 ± 34 of 4 1.24Up
Larval fat body31 ± 24 of 4 0.80None
Larval trachea47 ± 54 of 4 1.22Up
Larval carcass44 ± 34 of 4 1.14None
S2 cells (growing)99 ± 24 of 4 2.55Up
Whole fly39 ± 14 of 4

Looking for CG3862-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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