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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3871-RA through 18771 annotations produced 1 hits



myotonix (Six4):

Annotation Number : CG3871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027364
Gbrowse : chr3L:20781985-20785868 (-) // 100.0 //
Probeset : 1640844_s_at
Accessions : protein= NP_649256; /// NP_730566;, nucleotide= NM_140999; /// NM_168872;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007498 // mesoderm development // inferred from mutant phenot
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0027364.
Homophila reports that CG3871 is a close match (3e-58) to human gene HPE2;SIX3 (NP_005404), a gene associated with Holoprosencephaly-2, 157170 (3).
TRiP has 1 RNAi stocks for FBgn0027364 available for purchase.
VDRC has 5 RNAi stocks for FBgn0027364 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 00 of 4 0.20Down
Head6 00 of 4 0.10Down
Eye1 00 of 4 0.02Down
Thoracicoabdominal ganglion12 00 of 4 0.20Down
Salivary gland11 20 of 4 0.22Down
Crop5 20 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule4 10 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart0 00 of 4 0.02Down
Fat body8 81 of 4 0.16Down
Ovary80 44 of 4 1.60Up
Testis25 14 of 4 0.50Down
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca3 00 of 4 0.07Down
Mated spermatheca3 10 of 4 0.06Down
Adult carcass6 10 of 4 0.10Down
Larval CNS19 24 of 4 0.37Down
Larval Salivary gland4 10 of 4 0.09Down
Larval midgut2 00 of 4 0.04Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body5 21 of 4 0.10Down
Larval trachea1 00 of 4 0.03Down
Larval carcass3 00 of 4 0.07Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly51 54 of 4

Looking for CG3871-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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