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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3874-RA through 18771 annotations produced 1 hits



/// UDP-sugar transporter in 74C (CG32174 /// frc):

Annotation Number : CG3874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0042641 /// FBgn0052174
Gbrowse : chr3L:17424680-17426288 (-) // 100.0 //
Probeset : 1626038_at
Accessions : protein= NP_001137962; /// NP_524126; /// NP_648977; /// NP_730270;, nucleotide= NM_001144490; /// NM_079402; /// NM_140720; /// NM_168732;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence
Interpro : 0005457 // GDP-fucose transmembrane transporter activity // inferred from direct assay /// 0005458 // GDP-mannose transm
FlyMine data for FBgn0042641 /// FBgn0052174.
Homophila reports that CG3874 is a close match (7e-96) to human gene (NP_055954), a gene associated with .
BioGrid reports that CG3874 interacts with CG5338 CG9090 CG9375 CG18085 CG3936 CG3936 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain244 34 of 4 0.80Down
Head264 134 of 4 0.80Down
Eye181 94 of 4 0.58Down
Thoracicoabdominal ganglion242 74 of 4 0.80Down
Salivary gland571 284 of 4 1.83Up
Crop305 114 of 4 1.00None
Midgut522 244 of 4 1.70Up
Tubule2401 1864 of 4 7.70Up
Hindgut313 164 of 4 1.00None
Heart252 64 of 4 0.81Down
Fat body375 264 of 4 1.20Up
Ovary425 114 of 4 1.40Up
Testis82 44 of 4 0.30Down
Male accessory glands118 54 of 4 0.40Down
Virgin spermatheca457 124 of 4 1.47Up
Mated spermatheca516 254 of 4 1.65Up
Adult carcass278 64 of 4 0.90Down
Larval CNS237 94 of 4 0.76Down
Larval Salivary gland162 64 of 4 0.52Down
Larval midgut470 264 of 4 1.51Up
Larval tubule234 34 of 4 0.70Down
Larval hindgut324 144 of 4 1.04None
Larval fat body206 64 of 4 0.70Down
Larval trachea195 194 of 4 0.63Down
Larval carcass180 164 of 4 0.58Down
S2 cells (growing)969 204 of 4 3.11Up
Whole fly312 84 of 4

Looking for CG3874-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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