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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3881-RA through 18771 annotations produced 1 hits



GlcAT-S (GlcAT-S):

Annotation Number : CG3881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032135
Gbrowse : chr2L:9616468-9623115 (+) // 100.0 //
Probeset : 1628402_a_at
Accessions : protein= NP_001162922; /// NP_609303; /// NP_723476;, nucleotide= NM_001169451; /// NM_135459; /// NM_164864;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electro
Interpro : "0015018 // galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity // inferred from direct assay ///
FlyMine data for FBgn0032135.
BDGP gene expression has embryonic in situ data for CG3881: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0032135 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain386 ± 14 of 4 4.00Up
Head174 ± 74 of 4 1.80Up
Eye208 ± 194 of 4 2.15Up
Thoracicoabdominal ganglion445 ± 64 of 4 4.60Up
Salivary gland465 ± 424 of 4 4.80Up
Crop90 ± 44 of 4 0.90None
Midgut58 ± 44 of 4 0.60Down
Tubule121 ± 64 of 4 1.20Up
Hindgut56 ± 24 of 4 0.60Down
Heart83 ± 44 of 4 0.86None
Fat body100 ± 194 of 4 1.03None
Ovary145 ± 14 of 4 1.50Up
Testis91 ± 54 of 4 0.90None
Male accessory glands10 ± 21 of 4 0.10Down
Virgin spermatheca90 ± 44 of 4 0.93None
Mated spermatheca72 ± 34 of 4 0.75Down
Adult carcass135 ± 84 of 4 1.40Up
Larval CNS185 ± 144 of 4 1.91Up
Larval Salivary gland201 ± 114 of 4 2.08Up
Larval midgut59 ± 54 of 4 0.61Down
Larval tubule66 ± 64 of 4 0.70Down
Larval hindgut181 ± 24 of 4 1.87Up
Larval fat body73 ± 94 of 4 0.80None
Larval trachea75 ± 24 of 4 0.78Down
Larval carcass75 ± 64 of 4 0.78None
S2 cells (growing)95 ± 44 of 4 0.99None
Whole fly96 ± 64 of 4

Looking for CG3881-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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