FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3891-RA through 18771 annotations produced 1 hits

CG3891 (Nf-YA):

Annotation Number : CG3891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035993
Gbrowse : chr3L:9433155-9435353 (-) // 100.0 //
Probeset : 1630105_at
Accessions : protein= NP_648313;, nucleotide= NM_140056;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype /// 0033227 // dsRNA transport // inferred from mutant phenotype"
FlyMine data for FBgn0035993.
BDGP gene expression has embryonic in situ data for CG3891: 12 pix of staining in 6 body parts.
BioGrid reports that CG3891 interacts with CG3891 CG4287 CG4994 CG5014 CG6988 CG9842 .
TRiP has 1 RNAi stocks for FBgn0035993 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035993 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	167 ± 3	4 of 4	1.20	None
Head	76 ± 9	4 of 4	0.50	Down
Eye	99 ± 5	4 of 4	0.71	Down
Thoracicoabdominal ganglion	84 ± 8	4 of 4	0.60	Down
Salivary gland	54 ± 2	4 of 4	0.39	Down
Crop	54 ± 5	4 of 4	0.40	Down
Midgut	56 ± 2	4 of 4	0.40	Down
Tubule	34 ± 1	4 of 4	0.20	Down
Hindgut	73 ± 2	4 of 4	0.50	Down
Heart	94 ± 3	4 of 4	0.67	Down
Fat body	43 ± 6	4 of 4	0.31	Down
Ovary	227 ± 14	4 of 4	1.60	Up
Testis	108 ± 3	4 of 4	0.80	None
Male accessory glands	73 ± 6	4 of 4	0.50	Down
Virgin spermatheca	68 ± 4	4 of 4	0.49	Down
Mated spermatheca	75 ± 4	4 of 4	0.54	Down
Adult carcass	37 ± 4	4 of 4	0.30	Down
Larval CNS	262 ± 40	4 of 4	1.88	Up
Larval Salivary gland	63 ± 3	4 of 4	0.45	Down
Larval midgut	49 ± 3	4 of 4	0.35	Down
Larval tubule	40 ± 2	4 of 4	0.30	Down
Larval hindgut	61 ± 2	4 of 4	0.44	Down
Larval fat body	48 ± 7	4 of 4	0.30	Down
Larval trachea	92 ± 12	4 of 4	0.67	Down
Larval carcass	68 ± 2	4 of 4	0.49	Down
S2 cells (growing)	227 ± 2	4 of 4	1.63	Up
Whole fly	139 ± 11	4 of 4

Looking for CG3891-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720