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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3893-RA through 18771 annotations produced 1 hits



(CG3893):

Annotation Number : CG3893
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036826
Gbrowse : chr3L:18893694-18894593 (-) // 99.05 //
Probeset : 1639485_at
Accessions : protein= NP_649071;, nucleotide= NM_140814;
FlyMine data for FBgn0036826.
BDGP gene expression has embryonic in situ data for CG3893: 9 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0036826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 04 of 4 0.20Down
Head42 ± 14 of 4 0.30Down
Eye59 ± 24 of 4 0.42Down
Thoracicoabdominal ganglion28 ± 14 of 4 0.20Down
Salivary gland32 ± 73 of 4 0.23Down
Crop43 ± 24 of 4 0.30Down
Midgut32 ± 14 of 4 0.20Down
Tubule31 ± 14 of 4 0.20Down
Hindgut35 ± 44 of 4 0.30Down
Heart58 ± 34 of 4 0.41Down
Fat body69 ± 54 of 4 0.48Down
Ovary330 ± 34 of 4 2.30Up
Testis81 ± 44 of 4 0.60Down
Male accessory glands50 ± 64 of 4 0.40Down
Virgin spermatheca49 ± 14 of 4 0.35Down
Mated spermatheca44 ± 34 of 4 0.31Down
Adult carcass52 ± 24 of 4 0.40Down
Larval CNS94 ± 74 of 4 0.66Down
Larval Salivary gland20 ± 14 of 4 0.14Down
Larval midgut36 ± 34 of 4 0.25Down
Larval tubule97 ± 54 of 4 0.70Down
Larval hindgut38 ± 24 of 4 0.27Down
Larval fat body109 ± 34 of 4 0.80Down
Larval trachea90 ± 54 of 4 0.63Down
Larval carcass38 ± 04 of 4 0.27Down
S2 cells (growing)202 ± 34 of 4 1.42Up
Whole fly142 ± 64 of 4

Looking for CG3893-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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