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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3894-RB through 18771 annotations produced 1 hits



dmNeural-like (CG3894):

Annotation Number : CG3894
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035059
Gbrowse : chr2R:20650686-20651391 (+) // 100.0 //
Probeset : 1623638_a_at
Accessions : protein= NP_611963; /// NP_726480;, nucleotide= NM_138119; /// NM_166685;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035059.
TRiP has 1 RNAi stocks for FBgn0035059 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035059 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 54 of 4 1.50Up
Head57 84 of 4 1.00None
Eye82 54 of 4 1.38Up
Thoracicoabdominal ganglion44 44 of 4 0.70Down
Salivary gland56 64 of 4 0.95None
Crop46 44 of 4 0.80None
Midgut49 30 of 4 0.80None
Tubule14 12 of 4 0.20Down
Hindgut55 24 of 4 0.90None
Heart39 50 of 4 0.67Down
Fat body52 70 of 4 0.87None
Ovary83 34 of 4 1.40Up
Testis121 74 of 4 2.00Up
Male accessory glands36 34 of 4 0.60Down
Virgin spermatheca16 22 of 4 0.28Down
Mated spermatheca13 03 of 4 0.22Down
Adult carcass58 70 of 4 1.00None
Larval CNS29 24 of 4 0.50Down
Larval Salivary gland28 24 of 4 0.48Down
Larval midgut26 12 of 4 0.45Down
Larval tubule58 04 of 4 1.00None
Larval hindgut28 14 of 4 0.48Down
Larval fat body57 54 of 4 1.00None
Larval trachea44 114 of 4 0.74None
Larval carcass37 24 of 4 0.63Down
S2 cells (growing)50 14 of 4 0.84None
Whole fly59 34 of 4

Looking for CG3894-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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