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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3917-RC through 18771 annotations produced 1 hits



gamma-tubulin ring protein 84 (Grip84):

Annotation Number : CG3917
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026430
Gbrowse : chrX:19455372-19459447 (-) // 100.0 //
Probeset : 1633188_a_at
Accessions : protein= NP_001162797; /// NP_001162798; /// NP_523409; /// NP_728264; /// NP_728265;, nucleotide= NM_001169326; /// NM_001169327; /// NM_078685; /// NM_167662; /// NM_167663;
Pathway : 0000922 // spindle pole // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic anno
Interpro : 0008017 // microtubule binding // inferred from sequence or structural similarity /// 0015631 // tubulin binding // non-
FlyMine data for FBgn0026430.
BDGP gene expression has embryonic in situ data for Grip84: 13 pix of staining in 5 body parts.
BioGrid reports that CG3917 interacts with CG5064 CG3157 CG10988 .
TRiP has 1 RNAi stocks for FBgn0026430 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026430 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 ± 44 of 4 0.50Down
Head80 ± 54 of 4 0.30Down
Eye73 ± 14 of 4 0.24Down
Thoracicoabdominal ganglion139 ± 34 of 4 0.50Down
Salivary gland81 ± 114 of 4 0.26Down
Crop71 ± 34 of 4 0.20Down
Midgut49 ± 14 of 4 0.20Down
Tubule35 ± 24 of 4 0.10Down
Hindgut67 ± 44 of 4 0.20Down
Heart43 ± 34 of 4 0.14Down
Fat body31 ± 24 of 4 0.10Down
Ovary620 ± 54 of 4 2.00Up
Testis125 ± 64 of 4 0.40Down
Male accessory glands78 ± 44 of 4 0.30Down
Virgin spermatheca19 ± 24 of 4 0.06Down
Mated spermatheca25 ± 44 of 4 0.08Down
Adult carcass62 ± 54 of 4 0.20Down
Larval CNS231 ± 34 of 4 0.75None
Larval Salivary gland92 ± 24 of 4 0.30Down
Larval midgut41 ± 24 of 4 0.13Down
Larval tubule47 ± 14 of 4 0.20Down
Larval hindgut70 ± 44 of 4 0.23Down
Larval fat body56 ± 54 of 4 0.20Down
Larval trachea105 ± 74 of 4 0.34Down
Larval carcass66 ± 34 of 4 0.22Down
S2 cells (growing)139 ± 34 of 4 0.45Down
Whole fly309 ± 334 of 4

Looking for CG3917-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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