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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3918-RA through 18771 annotations produced 1 hits



(CG3918):

Annotation Number : CG3918
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029873
Gbrowse : chrX:6418505-6420374 (+) // 100.0 //
Probeset : 1638889_at
Accessions : protein= NP_572323;, nucleotide= NM_132095;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0029873.
BDGP gene expression has embryonic in situ data for CG3918: 8 pix of staining in 1 body parts.
BioGrid reports that CG3918 interacts with CG5808 CG6121 CG6843 CG9312 CG5374 CG6860 CG8280 CG8759 .
VDRC has 4 RNAi stocks for FBgn0029873 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 24 of 4 0.50Down
Head128 84 of 4 0.60Down
Eye91 54 of 4 0.40Down
Thoracicoabdominal ganglion135 84 of 4 0.60Down
Salivary gland201 144 of 4 0.88None
Crop155 74 of 4 0.70None
Midgut197 114 of 4 0.90None
Tubule125 34 of 4 0.50Down
Hindgut150 74 of 4 0.70Down
Heart112 74 of 4 0.49Down
Fat body150 124 of 4 0.65Down
Ovary351 134 of 4 1.50Up
Testis57 14 of 4 0.20Down
Male accessory glands250 204 of 4 1.10None
Virgin spermatheca198 34 of 4 0.86None
Mated spermatheca181 54 of 4 0.79None
Adult carcass107 44 of 4 0.50Down
Larval CNS324 84 of 4 1.41Up
Larval Salivary gland284 144 of 4 1.24None
Larval midgut197 44 of 4 0.86None
Larval tubule150 64 of 4 0.70Down
Larval hindgut235 54 of 4 1.02None
Larval fat body182 134 of 4 0.80None
Larval trachea329 154 of 4 1.43Up
Larval carcass304 124 of 4 1.32Up
S2 cells (growing)257 74 of 4 1.12None
Whole fly229 244 of 4

Looking for CG3918-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime