Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3919-RA through 18771 annotations produced 1 hits



(CG3919):

Annotation Number : CG3919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036423
Gbrowse : chr3L:14403725-14405832 (+) // 99.71 //
Probeset : 1631465_at
Accessions : protein= NP_648703;, nucleotide= NM_140446;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0042802 // identical protein binding // inferred from
FlyMine data for FBgn0036423.
BioGrid reports that CG3919 interacts with CG3919 CG8816 .
TRiP has 1 RNAi stocks for FBgn0036423 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036423 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.20Down
Head7 10 of 4 0.20Down
Eye5 00 of 4 0.16Down
Thoracicoabdominal ganglion7 00 of 4 0.20Down
Salivary gland16 50 of 4 0.50None
Crop7 10 of 4 0.20Down
Midgut6 10 of 4 0.20Down
Tubule4 10 of 4 0.10Down
Hindgut2 00 of 4 0.10Down
Heart3 10 of 4 0.10Down
Fat body4 30 of 4 0.13Down
Ovary73 24 of 4 2.30Up
Testis131 74 of 4 4.00Up
Male accessory glands52 24 of 4 1.60Up
Virgin spermatheca5 20 of 4 0.16Down
Mated spermatheca7 10 of 4 0.21Down
Adult carcass6 20 of 4 0.20Down
Larval CNS46 54 of 4 1.43Up
Larval Salivary gland9 20 of 4 0.30Down
Larval midgut2 00 of 4 0.07Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut3 10 of 4 0.12Down
Larval fat body34 93 of 4 1.10None
Larval trachea17 24 of 4 0.54Down
Larval carcass8 10 of 4 0.27Down
S2 cells (growing)27 14 of 4 0.83None
Whole fly32 24 of 4

Looking for CG3919-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime