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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3920-RA through 18771 annotations produced 1 hits

lethal (2) k16918 (l(2)k16918):

Annotation Number : CG3920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021800
Gbrowse : chr2L:3803580-3809064 (+) // 100.0 //
Probeset : 1624889_a_at
Accessions : protein= NP_652052; /// NP_722945;, nucleotide= NM_143795; /// NM_164561;
FlyMine data for FBgn0021800.
BDGP gene expression has embryonic in situ data for l(2)k16918: 31 pix of staining in 9 body parts.
TRiP has 1 RNAi stocks for FBgn0021800 available for purchase.
VDRC has 2 RNAi stocks for FBgn0021800 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain787 184 of 4 6.50Up
Head194 284 of 4 1.60None
Eye453 304 of 4 3.73Up
Thoracicoabdominal ganglion880 414 of 4 7.20Up
Salivary gland91 174 of 4 0.75None
Crop113 64 of 4 0.90None
Midgut30 04 of 4 0.20Down
Tubule41 24 of 4 0.30Down
Hindgut89 24 of 4 0.70Down
Heart145 94 of 4 1.19None
Fat body89 264 of 4 0.74None
Ovary225 24 of 4 1.80Up
Testis60 34 of 4 0.50Down
Male accessory glands29 44 of 4 0.20Down
Virgin spermatheca88 74 of 4 0.73Down
Mated spermatheca104 104 of 4 0.86None
Adult carcass78 84 of 4 0.60Down
Larval CNS681 1294 of 4 5.60Up
Larval Salivary gland31 34 of 4 0.26Down
Larval midgut38 44 of 4 0.32Down
Larval tubule45 24 of 4 0.40Down
Larval hindgut52 34 of 4 0.43Down
Larval fat body16 32 of 4 0.10Down
Larval trachea61 104 of 4 0.51Down
Larval carcass63 104 of 4 0.52Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly121 84 of 4

Looking for CG3920-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime