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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3922-RB through 18771 annotations produced 1 hits



ribosomal protein S17 (RpS17):

Annotation Number : CG3922
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005533
Gbrowse : chr3L:9421788-9422917 (-) // 100.0 //
Probeset : 1624529_at
Accessions : protein= NP_524002;, nucleotide= NM_079278;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0005533.
BioGrid reports that CG3922 interacts with CG4059 CG4476 CG8997 CG1849 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3441 ± 214 of 4 0.70Down
Head5581 ± 2274 of 4 1.10None
Eye6523 ± 1154 of 4 1.34Up
Thoracicoabdominal ganglion4684 ± 1434 of 4 1.00None
Salivary gland11324 ± 2994 of 4 2.33Up
Crop6806 ± 3244 of 4 1.40Up
Midgut6050 ± 864 of 4 1.20Up
Tubule3557 ± 1104 of 4 0.70Down
Hindgut5539 ± 694 of 4 1.10None
Heart7412 ± 4004 of 4 1.52Up
Fat body7731 ± 8494 of 4 1.59Up
Ovary4336 ± 704 of 4 0.90None
Testis1241 ± 254 of 4 0.30Down
Male accessory glands8947 ± 2344 of 4 1.80Up
Virgin spermatheca4945 ± 3964 of 4 1.02None
Mated spermatheca5514 ± 2354 of 4 1.13None
Adult carcass6420 ± 2354 of 4 1.30Up
Larval CNS3757 ± 1984 of 4 0.77Down
Larval Salivary gland9586 ± 3984 of 4 1.97Up
Larval midgut5676 ± 1604 of 4 1.17None
Larval tubule5434 ± 394 of 4 1.10None
Larval hindgut5600 ± 564 of 4 1.15None
Larval fat body8816 ± 9974 of 4 1.80Up
Larval trachea6886 ± 3704 of 4 1.42Up
Larval carcass5951 ± 4004 of 4 1.22None
S2 cells (growing)5848 ± 534 of 4 1.20Up
Whole fly4864 ± 2954 of 4

Looking for CG3922-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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