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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3924-RA through 18771 annotations produced 1 hits

Chip (Chi):

Annotation Number : CG3924
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0013764
Gbrowse : chr2R:19919061-19921459 (-) // 100.0 //
Probeset : 1627894_s_at
Accessions : protein= NP_477082; /// NP_726403;, nucleotide= NM_057734; /// NM_166650;
Pathway : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0013764.
BDGP gene expression has embryonic in situ data for Chi: 4 pix of staining in 1 body parts.
BioGrid reports that CG3924 interacts with CG4328 CG4570 CG5708 CG8376 CG4836 CG5618 CG7187 CG8697 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG8376 CG1034 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG6500 CG3978 CG3978 CG11387 CG3936 CG7187 CG10388 CG8573 CG18001 .
TRiP has 2 RNAi stocks for FBgn0013764 available for purchase.
VDRC has 3 RNAi stocks for FBgn0013764 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain218 14 of 4 1.20Up
Head138 44 of 4 0.70Down
Eye167 104 of 4 0.89None
Thoracicoabdominal ganglion195 64 of 4 1.00None
Salivary gland235 104 of 4 1.25Up
Crop160 74 of 4 0.90None
Midgut89 44 of 4 0.50Down
Tubule131 24 of 4 0.70Down
Hindgut126 24 of 4 0.70Down
Heart97 44 of 4 0.52Down
Fat body113 84 of 4 0.61Down
Ovary395 84 of 4 2.10Up
Testis90 24 of 4 0.50Down
Male accessory glands183 104 of 4 1.00None
Virgin spermatheca174 104 of 4 0.93None
Mated spermatheca157 104 of 4 0.84None
Adult carcass100 84 of 4 0.50Down
Larval CNS350 344 of 4 1.87Up
Larval Salivary gland184 94 of 4 0.98None
Larval midgut117 44 of 4 0.63Down
Larval tubule158 14 of 4 0.80None
Larval hindgut164 24 of 4 0.88None
Larval fat body131 24 of 4 0.70Down
Larval trachea165 204 of 4 0.88None
Larval carcass145 34 of 4 0.77Down
S2 cells (growing)186 74 of 4 0.99None
Whole fly187 104 of 4

Looking for CG3924-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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