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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3927-RA through 18771 annotations produced 1 hits


(CG3927):

Annotation Number : CG3927
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034739
Gbrowse : chr2R:18482192-18483853 (+) // 99.53 //
Probeset : 1636356_at
Accessions : protein= NP_611681;, nucleotide= NM_137837;
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0034739.
BioGrid reports that CG3927 interacts with CG4813 CG7809 CG9986 .
VDRC has 2 RNAi stocks for FBgn0034739 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.00Down
Eye8 ± 12 of 4 0.17Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland14 ± 70 of 4 0.27Down
Crop2 ± 00 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.02Down
Fat body3 ± 10 of 4 0.07Down
Ovary1 ± 00 of 4 0.00Down
Testis715 ± 364 of 413.60Up
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca1 ± 00 of 4 0.02Down
Adult carcass4 ± 20 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.09Down
Larval Salivary gland6 ± 30 of 4 0.12Down
Larval midgut2 ± 10 of 4 0.05Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.05Down
Larval fat body168 ± 764 of 4 3.20None
Larval trachea11 ± 83 of 4 0.23Down
Larval carcass3 ± 10 of 4 0.06Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly52 ± 74 of 4

Looking for CG3927-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime