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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3929-RA through 18771 annotations produced 1 hits

deltex (dx):

Annotation Number : CG3929
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000524
Gbrowse : chrX:6428042-6432615 (+) // 100.0 //
Probeset : 1626617_at
Accessions : protein= NP_511064;, nucleotide= NM_078509;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // non-traceable author statement /// 000573
Interpro : 0005112 // Notch binding // traceable author statement /// 0005112 // Notch binding // inferred from physical interactio
FlyMine data for FBgn0000524.
BDGP gene expression has embryonic in situ data for dx: 4 pix of staining in 1 body parts.
BioGrid reports that CG3929 interacts with CG4216 CG4617 CG4697 CG4755 CG4832 CG4896 CG5009 CG5480 CG5494 CG5709 CG5711 CG6276 CG7109 CG7264 CG7518 CG7524 CG7605 CG7873 CG8247 CG8368 CG9083 CG9331 CG18361 CG5460 CG4264 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG3936 CG2863 CG4244 CG4244 CG4244 CG9854 CG8118 .
TRiP has 2 RNAi stocks for FBgn0000524 available for purchase.
VDRC has 2 RNAi stocks for FBgn0000524 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 14 of 4 0.20Down
Head58 14 of 4 0.30Down
Eye70 24 of 4 0.40Down
Thoracicoabdominal ganglion47 14 of 4 0.30Down
Salivary gland200 114 of 4 1.14None
Crop98 44 of 4 0.60Down
Midgut53 44 of 4 0.30Down
Tubule97 04 of 4 0.60Down
Hindgut75 24 of 4 0.40Down
Heart44 24 of 4 0.25Down
Fat body67 44 of 4 0.39Down
Ovary571 114 of 4 3.30Up
Testis17 14 of 4 0.10Down
Male accessory glands140 24 of 4 0.80Down
Virgin spermatheca99 44 of 4 0.57Down
Mated spermatheca98 54 of 4 0.56Down
Adult carcass57 44 of 4 0.30Down
Larval CNS175 174 of 4 1.00None
Larval Salivary gland346 114 of 4 1.97Up
Larval midgut75 84 of 4 0.43Down
Larval tubule95 24 of 4 0.50Down
Larval hindgut111 34 of 4 0.63Down
Larval fat body97 94 of 4 0.60Down
Larval trachea152 94 of 4 0.87None
Larval carcass115 84 of 4 0.65Down
S2 cells (growing)118 44 of 4 0.68Down
Whole fly175 74 of 4

Looking for CG3929-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime