FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3931-RA through 18771 annotations produced 1 hits

Rrp4 (Rrp4):

Annotation Number : CG3931
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034879
Gbrowse : chr2R:19442540-19443724 (-) // 100.0 //
Probeset : 1641430_at
Accessions : protein= NP_611807;, nucleotide= NM_137963;
Pathway : 0000176 // nuclear exosome (RNase complex) // inferred from physical interaction /// 0000176 // nuclear exosome (RNase c
Interpro : 0000175 // 3'-5'-exoribonuclease activity // inferred from sequence or structural similarity /// 0003723 // RNA binding
FlyMine data for FBgn0034879.
BioGrid reports that CG3931 interacts with CG8884 CG12225 CG8025 CG7626 CG7292 CG6249 .
VDRC has 3 RNAi stocks for FBgn0034879 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	45 ± 3	4 of 4	0.40	Down
Head	69 ± 3	4 of 4	0.50	Down
Eye	45 ± 3	4 of 4	0.35	Down
Thoracicoabdominal ganglion	34 ± 0	4 of 4	0.30	Down
Salivary gland	111 ± 8	4 of 4	0.86	None
Crop	87 ± 7	4 of 4	0.70	Down
Midgut	92 ± 7	4 of 4	0.70	Down
Tubule	57 ± 6	4 of 4	0.40	Down
Hindgut	78 ± 7	4 of 4	0.60	Down
Heart	53 ± 5	4 of 4	0.42	Down
Fat body	117 ± 9	4 of 4	0.91	None
Ovary	181 ± 6	4 of 4	1.40	Up
Testis	84 ± 3	4 of 4	0.70	Down
Male accessory glands	242 ± 8	4 of 4	1.90	Up
Virgin spermatheca	85 ± 6	4 of 4	0.66	Down
Mated spermatheca	93 ± 5	4 of 4	0.72	Down
Adult carcass	77 ± 6	4 of 4	0.60	Down
Larval CNS	128 ± 13	4 of 4	0.99	None
Larval Salivary gland	123 ± 9	4 of 4	0.96	None
Larval midgut	68 ± 6	4 of 4	0.53	Down
Larval tubule	41 ± 3	4 of 4	0.30	Down
Larval hindgut	71 ± 2	4 of 4	0.55	Down
Larval fat body	52 ± 5	2 of 4	0.40	Down
Larval trachea	145 ± 26	4 of 4	1.12	None
Larval carcass	107 ± 6	4 of 4	0.83	None
S2 cells (growing)	120 ± 5	4 of 4	0.93	None
Whole fly	129 ± 11	4 of 4

Looking for CG3931-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720