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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3936-RA through 18771 annotations produced 1 hits



chrX:3028904-3066295 (+) // 100.0 // (Notch):

Annotation Number : CG3936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634576_at
Accessions : protein= , nucleotide= NP_476859;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 00017
Interpro : imaginal disc // traceable author statement /// 0007451 // dorsal/ventral lineage restriction
FlyMine data for full length.
Homophila reports that CG3936 is a close match (8e-11) to human gene LAMB2;LAMS (NP_002283), a gene associated with Nephrosis, congenital, with or without ocular abnormalities, 609049 (3);Pierson syndrome, 609049 (3).
BioGrid reports that CG3936 interacts with CG4032 CG4032 CG4032 CG4032 CG3166 CG3166 CG4722 CG4722 CG3096 CG6500 CG2534 CG2189 CG33183 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG3619 CG18361 CG18361 CG18361 CG18361 CG3929 CG3929 CG3929 CG3929 CG3929 CG3929 CG3929 CG3929 CG3929 CG3929 CG3929 CG3929 CG3929 CG3929 CG1007 CG1007 CG1007 CG1007 CG15112 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG8365 CG17697 CG8384 CG8384 CG8384 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG5460 CG4264 CG4264 CG3696 CG10109 CG10109 CG9075 CG3903 CG4097 CG8922 CG2746 CG6099 CG8361 CG8361 CG8118 CG8118 CG8118 CG8118 CG8118 CG8118 CG8118 CG8118 CG8118 CG8118 CG8337 CG14548 CG14548 CG8328 CG8328 CG8333 CG8333 CG11988 CG3779 CG3779 CG3779 CG3779 CG3779 CG3779 CG3779 CG3779 CG11084 CG17077 CG17077 CG4444 CG31349 CG9375 CG9375 CG10393 CG4385 CG4385 CG17579 CG17579 CG17579 CG17579 CG17579 CG17579 CG2621 CG2621 CG3722 CG1395 CG4244 CG4244 CG4244 CG4244 CG9874 CG14026 CG14026 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG10079 CG2411 CG10388 CG3830 CG3830 CG3830 CG10491 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG4889 CG3411 CG3411 CG9704 CG9704 CG6127 CG6127 CG6127 CG11387 CG3725 CG7672 CG7672 CG1004 CG7807 CG5529 CG12084 CG17667 CG2446 CG2446 CG12530 CG3924 CG7583 CG3619 CG3619 CG15793 CG5820 CG5820 CG4903 CG17704 CG2863 CG2863 CG3329 CG18803 CG18803 CG18803 CG18803 CG18803 CG18803 CG18803 CG18803 CG6601 CG6601 CG6127 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG3497 CG1520 CG1520 CG3166 CG3166 CG3166 CG3166 CG13425 CG10605 CG4063 CG10580 CG10580 CG10580 CG10580 CG10580 CG10580 CG10580 CG10580 CG3874 CG3874 CG9854 CG11312 CG7147 CG7147 CG7147 CG7147 CG7147 CG7147 CG7147 CG7147 CG3839 CG3839 CG8732 CG12052 CG5738 CG8337 CG7012 CG7012 CG7012 CG7892 CG7892 CG10108 CG1903 CG1903 CG18497 CG5408 CG18214 CG3830 CG4488 CG32417 CG33101 CG32217 CG31774 CG3929 CG3929 CG18001 CG18001 CG6684 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain98 ± 154 of 4 1.60Up
Head69 ± 44 of 4 1.10None
Eye73 ± 44 of 4 1.20None
Thoracicoabdominal ganglion132 ± 134 of 4 2.10Up
Salivary gland8 ± 20 of 4 0.14Down
Crop34 ± 44 of 4 0.60Down
Midgut20 ± 34 of 4 0.30Down
Tubule3 ± 10 of 4 0.10Down
Hindgut19 ± 14 of 4 0.30Down
Heart38 ± 54 of 4 0.63Down
Fat body22 ± 71 of 4 0.37Down
Ovary177 ± 14 of 4 2.90Up
Testis6 ± 12 of 4 0.10Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca13 ± 23 of 4 0.22Down
Mated spermatheca22 ± 34 of 4 0.37Down
Adult carcass37 ± 44 of 4 0.60Down
Larval CNS476 ± 1074 of 4 7.75Up
Larval Salivary gland18 ± 22 of 4 0.31Down
Larval midgut40 ± 62 of 4 0.66None
Larval tubule6 ± 10 of 4 0.10Down
Larval hindgut66 ± 54 of 4 1.08None
Larval fat body15 ± 40 of 4 0.20Down
Larval trachea229 ± 564 of 4 3.72Up
Larval carcass159 ± 144 of 4 2.59Up
S2 cells (growing)86 ± 114 of 4 1.41None
Whole fly61 ± 64 of 4

Looking for CG3936-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime