FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3939-RA through 18771 annotations produced 1 hits

(CG3939):

Annotation Number : CG3939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040396
Gbrowse : chrX:3069151-3070257 (+) // 100.0 //
Probeset : 1641648_at
Accessions : protein= NP_570048;, nucleotide= NM_130692;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040396.
BDGP gene expression has embryonic in situ data for EG:140G11.5: 15 pix of staining in 4 body parts.
BioGrid reports that CG3939 interacts with CG4829 Dmel CG34159 CG4111 CG7014 .
VDRC has 2 RNAi stocks for FBgn0040396 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	74 ± 2	4 of 4	0.20	Down
Head	178 ± 17	4 of 4	0.60	Down
Eye	357 ± 20	4 of 4	1.17	None
Thoracicoabdominal ganglion	91 ± 8	4 of 4	0.30	Down
Salivary gland	378 ± 25	4 of 4	1.23	None
Crop	282 ± 10	4 of 4	0.90	None
Midgut	475 ± 15	4 of 4	1.50	Up
Tubule	506 ± 48	4 of 4	1.70	Up
Hindgut	244 ± 4	4 of 4	0.80	Down
Heart	202 ± 5	4 of 4	0.66	Down
Fat body	160 ± 6	4 of 4	0.52	Down
Ovary	481 ± 6	4 of 4	1.60	Up
Testis	421 ± 21	4 of 4	1.40	Up
Male accessory glands	317 ± 9	4 of 4	1.00	None
Virgin spermatheca	321 ± 9	4 of 4	1.05	None
Mated spermatheca	348 ± 12	4 of 4	1.14	None
Adult carcass	120 ± 8	4 of 4	0.40	Down
Larval CNS	476 ± 26	4 of 4	1.55	Up
Larval Salivary gland	605 ± 15	4 of 4	1.97	Up
Larval midgut	459 ± 8	4 of 4	1.50	Up
Larval tubule	1421 ± 53	4 of 4	4.60	Up
Larval hindgut	344 ± 12	4 of 4	1.12	None
Larval fat body	885 ± 73	4 of 4	2.90	Up
Larval trachea	515 ± 32	4 of 4	1.68	Up
Larval carcass	322 ± 17	4 of 4	1.05	None
S2 cells (growing)	396 ± 5	4 of 4	1.29	Up
Whole fly	306 ± 17	4 of 4

Looking for CG3939-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720