Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3941-RA through 18771 annotations produced 1 hits



spotted dick (pita):

Annotation Number : CG3941
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034878
Gbrowse : chr2R:19436487-19442241 (-) // 100.0 //
Probeset : 1634094_a_at
Accessions : protein= NP_611806; /// NP_726339;, nucleotide= NM_137962; /// NM_166607;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direc
FlyMine data for FBgn0034878.
BDGP gene expression has embryonic in situ data for CG3941: 38 pix of staining in 10 body parts.
Homophila reports that CG3941 is a close match (8e-11) to human gene EGR2;KROX20 (NP_000390), a gene associated with Charcot-Marie-Tooth disease, type 1D, 607678 (3);Dejerine-Sottas neuropathy, 145900 (3);Neuropathy, congenital hypomyelinating, 1, 605253 (3).
BioGrid reports that CG3941 interacts with CG7091 .
TRiP has 1 RNAi stocks for FBgn0034878 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034878 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 64 of 4 1.10None
Head86 54 of 4 0.60Down
Eye106 44 of 4 0.69Down
Thoracicoabdominal ganglion136 64 of 4 0.90None
Salivary gland149 64 of 4 0.97None
Crop114 54 of 4 0.70Down
Midgut49 33 of 4 0.30Down
Tubule66 34 of 4 0.40Down
Hindgut92 34 of 4 0.60Down
Heart64 14 of 4 0.42Down
Fat body53 64 of 4 0.34Down
Ovary364 74 of 4 2.40Up
Testis181 94 of 4 1.20None
Male accessory glands121 134 of 4 0.80None
Virgin spermatheca67 94 of 4 0.44Down
Mated spermatheca73 54 of 4 0.47Down
Adult carcass77 143 of 4 0.50Down
Larval CNS282 204 of 4 1.84Up
Larval Salivary gland132 54 of 4 0.86None
Larval midgut48 33 of 4 0.31Down
Larval tubule73 04 of 4 0.50Down
Larval hindgut74 44 of 4 0.48Down
Larval fat body75 74 of 4 0.50Down
Larval trachea149 124 of 4 0.97None
Larval carcass84 34 of 4 0.55Down
S2 cells (growing)171 34 of 4 1.11None
Whole fly154 104 of 4

Looking for CG3941-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime