FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3941-RA through 18771 annotations produced 1 hits

spotted dick (pita):

Annotation Number : CG3941
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034878
Gbrowse : chr2R:19436487-19442241 (-) // 100.0 //
Probeset : 1634094_a_at
Accessions : protein= NP_611806; /// NP_726339;, nucleotide= NM_137962; /// NM_166607;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direc
FlyMine data for FBgn0034878.
BDGP gene expression has embryonic in situ data for CG3941: 38 pix of staining in 10 body parts.
Homophila reports that CG3941 is a close match (8e-11) to human gene EGR2;KROX20 (NP_000390), a gene associated with Charcot-Marie-Tooth disease, type 1D, 607678 (3);Dejerine-Sottas neuropathy, 145900 (3);Neuropathy, congenital hypomyelinating, 1, 605253 (3).
BioGrid reports that CG3941 interacts with CG7091 .
TRiP has 1 RNAi stocks for FBgn0034878 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034878 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	166 ± 6	4 of 4	1.10	None
Head	86 ± 5	4 of 4	0.60	Down
Eye	106 ± 4	4 of 4	0.69	Down
Thoracicoabdominal ganglion	136 ± 6	4 of 4	0.90	None
Salivary gland	149 ± 6	4 of 4	0.97	None
Crop	114 ± 5	4 of 4	0.70	Down
Midgut	49 ± 3	3 of 4	0.30	Down
Tubule	66 ± 3	4 of 4	0.40	Down
Hindgut	92 ± 3	4 of 4	0.60	Down
Heart	64 ± 1	4 of 4	0.42	Down
Fat body	53 ± 6	4 of 4	0.34	Down
Ovary	364 ± 7	4 of 4	2.40	Up
Testis	181 ± 9	4 of 4	1.20	None
Male accessory glands	121 ± 13	4 of 4	0.80	None
Virgin spermatheca	67 ± 9	4 of 4	0.44	Down
Mated spermatheca	73 ± 5	4 of 4	0.47	Down
Adult carcass	77 ± 14	3 of 4	0.50	Down
Larval CNS	282 ± 20	4 of 4	1.84	Up
Larval Salivary gland	132 ± 5	4 of 4	0.86	None
Larval midgut	48 ± 3	3 of 4	0.31	Down
Larval tubule	73 ± 0	4 of 4	0.50	Down
Larval hindgut	74 ± 4	4 of 4	0.48	Down
Larval fat body	75 ± 7	4 of 4	0.50	Down
Larval trachea	149 ± 12	4 of 4	0.97	None
Larval carcass	84 ± 3	4 of 4	0.55	Down
S2 cells (growing)	171 ± 3	4 of 4	1.11	None
Whole fly	154 ± 10	4 of 4

Looking for CG3941-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720