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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3944-RA through 18771 annotations produced 1 hits



NADH:ubiquinone reductase 23kD subunit precursor (ND23):

Annotation Number : CG3944
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0017567
Gbrowse : chr3R:11661765-11662819 (-) // 100.0 //
Probeset : 1627220_at
Accessions : protein= NP_524719;, nucleotide= NM_079980;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0019684 // photosynthesis
Interpro : light reaction // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic an
FlyMine data for FBgn0017567.
BDGP gene expression has embryonic in situ data for ND23: 14 pix of staining in 12 body parts.
Homophila reports that CG3944 is a close match (1e-76) to human gene NDUFS8 (NP_002487), a gene associated with Leigh syndrome, 256000 (3).
TRiP has 1 RNAi stocks for FBgn0017567 available for purchase.
VDRC has 3 RNAi stocks for FBgn0017567 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1819 ± 384 of 4 1.10None
Head1683 ± 404 of 4 1.00None
Eye2040 ± 604 of 4 1.24Up
Thoracicoabdominal ganglion2418 ± 544 of 4 1.50Up
Salivary gland1789 ± 254 of 4 1.09None
Crop1276 ± 734 of 4 0.80Down
Midgut1467 ± 424 of 4 0.90None
Tubule1604 ± 524 of 4 1.00None
Hindgut2235 ± 314 of 4 1.40Up
Heart1944 ± 584 of 4 1.18Up
Fat body1484 ± 1244 of 4 0.90None
Ovary835 ± 224 of 4 0.50Down
Testis664 ± 104 of 4 0.40Down
Male accessory glands1066 ± 174 of 4 0.60Down
Virgin spermatheca1291 ± 504 of 4 0.79Down
Mated spermatheca1276 ± 124 of 4 0.78Down
Adult carcass3506 ± 1344 of 4 2.10Up
Larval CNS867 ± 894 of 4 0.53Down
Larval Salivary gland1122 ± 444 of 4 0.68Down
Larval midgut1148 ± 724 of 4 0.70Down
Larval tubule712 ± 714 of 4 0.40Down
Larval hindgut1489 ± 864 of 4 0.91None
Larval fat body653 ± 84 of 4 0.40Down
Larval trachea819 ± 554 of 4 0.50Down
Larval carcass1273 ± 914 of 4 0.78Down
S2 cells (growing)686 ± 134 of 4 0.42Down
Whole fly1642 ± 984 of 4

Looking for CG3944-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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