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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3947-RA through 18771 annotations produced 1 hits



peroxin 16 (pex16):

Annotation Number : CG3947
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037019
Gbrowse : chr3L:20769865-20771340 (-) // 100.0 //
Probeset : 1640826_at
Accessions : protein= NP_649252;, nucleotide= NM_140995;
FlyMine data for FBgn0037019.
BDGP gene expression has embryonic in situ data for CG3947: 6 pix of staining in 1 body parts.
Homophila reports that CG3947 is a close match (5e-32) to human gene PEX16 (NP_476515), a gene associated with Zellweger syndrome, complementation group 9 (3).
VDRC has 4 RNAi stocks for FBgn0037019 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain124 ± 44 of 4 0.70Down
Head134 ± 24 of 4 0.80Down
Eye145 ± 54 of 4 0.86Down
Thoracicoabdominal ganglion96 ± 14 of 4 0.60Down
Salivary gland152 ± 84 of 4 0.90None
Crop514 ± 174 of 4 3.00Up
Midgut641 ± 74 of 4 3.80Up
Tubule394 ± 254 of 4 2.30Up
Hindgut274 ± 94 of 4 1.60Up
Heart231 ± 84 of 4 1.36Up
Fat body201 ± 84 of 4 1.19Up
Ovary215 ± 24 of 4 1.30Up
Testis36 ± 04 of 4 0.20Down
Male accessory glands199 ± 24 of 4 1.20Up
Virgin spermatheca68 ± 34 of 4 0.40Down
Mated spermatheca80 ± 34 of 4 0.47Down
Adult carcass182 ± 54 of 4 1.10None
Larval CNS135 ± 64 of 4 0.80Down
Larval Salivary gland221 ± 74 of 4 1.30Up
Larval midgut331 ± 314 of 4 1.95Up
Larval tubule364 ± 64 of 4 2.10Up
Larval hindgut111 ± 34 of 4 0.66Down
Larval fat body166 ± 154 of 4 1.00None
Larval trachea187 ± 214 of 4 1.10None
Larval carcass112 ± 24 of 4 0.67Down
S2 cells (growing)148 ± 24 of 4 0.88Down
Whole fly169 ± 54 of 4

Looking for CG3947-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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