FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3949-RA through 18771 annotations produced 1 hits

hoi-polloi /// Partner of Inscuteable (hoip /// raps):

Annotation Number : CG3949
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015393
Gbrowse : chr2L:9699833-9700465 (+) // 100.0 //
Probeset : 1640574_at
Accessions : protein= NP_524714; /// NP_524999;, nucleotide= NM_079975; /// NM_080260;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from elec
FlyMine data for FBgn0015393.
BioGrid reports that CG3949 interacts with CG4076 CG4832 CG4878 CG7838 .
VDRC has 3 RNAi stocks for FBgn0015393 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	58 ± 2	4 of 4	0.00	Down
Head	163 ± 5	4 of 4	0.10	Down
Eye	88 ± 9	4 of 4	0.07	Down
Thoracicoabdominal ganglion	100 ± 6	4 of 4	0.10	Down
Salivary gland	153 ± 13	4 of 4	0.13	Down
Crop	218 ± 10	4 of 4	0.20	Down
Midgut	301 ± 13	4 of 4	0.30	Down
Tubule	210 ± 46	4 of 4	0.20	Down
Hindgut	128 ± 2	4 of 4	0.10	Down
Heart	174 ± 9	4 of 4	0.14	Down
Fat body	313 ± 79	4 of 4	0.26	Down
Ovary	1820 ± 34	4 of 4	1.50	Up
Testis	61 ± 3	4 of 4	0.10	Down
Male accessory glands	711 ± 41	4 of 4	0.60	Down
Virgin spermatheca	394 ± 44	4 of 4	0.33	Down
Mated spermatheca	648 ± 21	4 of 4	0.54	Down
Adult carcass	234 ± 11	4 of 4	0.20	Down
Larval CNS	827 ± 33	4 of 4	0.69	Down
Larval Salivary gland	713 ± 61	4 of 4	0.59	Down
Larval midgut	242 ± 26	4 of 4	0.20	Down
Larval tubule	85 ± 4	4 of 4	0.10	Down
Larval hindgut	275 ± 56	4 of 4	0.23	Down
Larval fat body	118 ± 9	4 of 4	0.10	Down
Larval trachea	918 ± 173	4 of 4	0.76	Down
Larval carcass	551 ± 164	4 of 4	0.46	Down
S2 cells (growing)	614 ± 22	4 of 4	0.51	Down
Whole fly	1202 ± 63	4 of 4

Looking for CG3949-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720