Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3956-RA through 18771 annotations produced 1 hits



chr2L:15476592-15478269 (-) // 100.0 // (snail):

Annotation Number : CG3956
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1636646_at
Accessions : protein= , nucleotide= NP_476732;
Pathway : "0000122 // negative regulation of transcription from RNA polymerase II promoter // traceable author statement /// 00017
Interpro : imaginal disc // non-traceable author statement /// 0007498 // mesoderm development // non-traceable author statement /
FlyMine data for full length.
Homophila reports that CG3956 is a close match (8e-11) to human gene FKLF;FKLF1;KLF11;MODY7;TIEG2 (NP_003588), a gene associated with Maturity-onset diabetes of the young, type VII, 610508 (3).
BioGrid reports that CG3956 interacts with CG7583 CG7135 CG7803 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.30Down
Head7 01 of 4 0.50None
Eye4 11 of 4 0.25Down
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland23 22 of 4 1.47None
Crop9 22 of 4 0.60None
Midgut14 12 of 4 0.90None
Tubule6 00 of 4 0.40Down
Hindgut3 01 of 4 0.20Down
Heart3 01 of 4 0.25Down
Fat body15 31 of 4 0.95None
Ovary3 00 of 4 0.20Down
Testis4 10 of 4 0.30Down
Male accessory glands3 00 of 4 0.20Down
Virgin spermatheca12 02 of 4 0.79None
Mated spermatheca10 12 of 4 0.64None
Adult carcass14 30 of 4 0.90None
Larval CNS230 114 of 414.60Up
Larval Salivary gland15 23 of 4 0.95None
Larval midgut18 03 of 4 1.14None
Larval tubule8 21 of 4 0.50None
Larval hindgut8 13 of 4 0.56None
Larval fat body7 20 of 4 0.50None
Larval trachea2 21 of 4 0.13Down
Larval carcass5 11 of 4 0.36Down
S2 cells (growing)6 00 of 4 0.39Down
Whole fly15 24 of 4

Looking for CG3956-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime