FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3960-RC through 18771 annotations produced 1 hits

CG3950 (CG34417):

Annotation Number : CG3960
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085446
Gbrowse : chrX:6465955-6483205 (+) // 100.0 //
Probeset : 1628465_a_at
Accessions : protein= NP_001096892; /// NP_001096893; /// NP_001096895; /// NP_001096896; /// NP_001162679; /// NP_001162680;, nucleotide= NM_001103422; /// NM_001103423; /// NM_001103425; /// NM_001103426; /// NM_001169208; /// NM_001169209;
Pathway : 0005856 // cytoskeleton // inferred from sequence or structural similarity /// 0005875 // microtubule associated complex
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005200 // structural constituent of cyt
FlyMine data for FBgn0085446.
Homophila reports that CG3960 is a close match (2e-13) to human gene BMD;CMD3B;DMD (NP_004001), a gene associated with Becker muscular dystrophy, 300376 (3);Cardiomyopathy, dilated, 3B, 302045 (3);Duchenne muscular dystrophy, 310200 (3).
VDRC has 4 RNAi stocks for FBgn0085446 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	133 ± 2	4 of 4	0.30	Down
Head	600 ± 30	4 of 4	1.50	Up
Eye	803 ± 55	4 of 4	2.03	Up
Thoracicoabdominal ganglion	219 ± 7	4 of 4	0.60	Down
Salivary gland	1479 ± 31	4 of 4	3.73	Up
Crop	2019 ± 82	4 of 4	5.10	Up
Midgut	411 ± 8	4 of 4	1.00	None
Tubule	631 ± 29	4 of 4	1.60	Up
Hindgut	1325 ± 24	4 of 4	3.30	Up
Heart	1021 ± 39	4 of 4	2.58	Up
Fat body	303 ± 38	4 of 4	0.77	Down
Ovary	67 ± 2	4 of 4	0.20	Down
Testis	129 ± 3	4 of 4	0.30	Down
Male accessory glands	352 ± 10	4 of 4	0.90	Down
Virgin spermatheca	155 ± 7	4 of 4	0.39	Down
Mated spermatheca	194 ± 16	4 of 4	0.49	Down
Adult carcass	911 ± 42	4 of 4	2.30	Up
Larval CNS	369 ± 44	4 of 4	0.93	None
Larval Salivary gland	698 ± 47	4 of 4	1.76	Up
Larval midgut	461 ± 28	4 of 4	1.17	None
Larval tubule	269 ± 7	4 of 4	0.70	Down
Larval hindgut	1393 ± 67	4 of 4	3.52	Up
Larval fat body	292 ± 24	4 of 4	0.70	Down
Larval trachea	2116 ± 68	4 of 4	5.34	Up
Larval carcass	2996 ± 54	4 of 4	7.57	Up
S2 cells (growing)	25 ± 1	4 of 4	0.06	Down
Whole fly	396 ± 8	4 of 4

Looking for CG3960-RC. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720