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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3962-RA through 18771 annotations produced 1 hits



Keap1 (Keap1):

Annotation Number : CG3962
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038475
Gbrowse : chr3R:12899650-12905665 (-) // 100.0 //
Probeset : 1633773_s_at
Accessions : protein= NP_650594; /// NP_732202; /// NP_788685;, nucleotide= NM_142337; /// NM_169744; /// NM_176508;
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0038475.
BDGP gene expression has embryonic in situ data for CG3962: 43 pix of staining in 12 body parts.
Homophila reports that CG3962 is a close match (3e-51) to human gene GAN;GAN1 (NP_071324), a gene associated with Giant axonal neuropathy-1, 256850 (3).
BioGrid reports that CG3962 interacts with CG4067 CG4206 CG5352 .
TRiP has 1 RNAi stocks for FBgn0038475 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 04 of 4 1.30Up
Head50 24 of 4 1.20Up
Eye37 44 of 4 0.89None
Thoracicoabdominal ganglion39 24 of 4 0.90None
Salivary gland42 33 of 4 0.99None
Crop150 34 of 4 3.50Up
Midgut148 74 of 4 3.50Up
Tubule133 54 of 4 3.10Up
Hindgut70 34 of 4 1.70Up
Heart62 24 of 4 1.48Up
Fat body89 74 of 4 2.12Up
Ovary42 14 of 4 1.00None
Testis10 13 of 4 0.20Down
Male accessory glands17 10 of 4 0.40Down
Virgin spermatheca36 14 of 4 0.87Down
Mated spermatheca38 24 of 4 0.90None
Adult carcass58 44 of 4 1.40Up
Larval CNS50 34 of 4 1.18Up
Larval Salivary gland28 44 of 4 0.68None
Larval midgut67 54 of 4 1.60Up
Larval tubule74 34 of 4 1.70Up
Larval hindgut43 24 of 4 1.03None
Larval fat body83 84 of 4 2.00Up
Larval trachea29 34 of 4 0.68Down
Larval carcass40 54 of 4 0.94None
S2 cells (growing)36 34 of 4 0.85None
Whole fly42 14 of 4

Looking for CG3962-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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