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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3964-RA through 18771 annotations produced 2 hits



(CG3964):

Annotation Number : CG3964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031574
Gbrowse : chr2L:3862680-3867504 (+) // 100.0 //
Probeset : 1623691_at
Accessions : protein= NP_608810; /// NP_722946;, nucleotide= NM_134966; /// NM_164562;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity //
FlyMine data for FBgn0031574.
BDGP gene expression has embryonic in situ data for CG3964: 24 pix of staining in 12 body parts.
VDRC has 3 RNAi stocks for FBgn0031574 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.60None
Head1 00 of 4 0.50None
Eye3 00 of 4 0.93None
Thoracicoabdominal ganglion4 10 of 4 1.40None
Salivary gland11 31 of 4 3.54None
Crop2 10 of 4 0.70None
Midgut2 10 of 4 0.80None
Tubule2 00 of 4 0.90None
Hindgut5 00 of 4 1.60None
Heart3 00 of 4 1.14None
Fat body3 21 of 4 0.98None
Ovary1 00 of 4 0.30None
Testis54 34 of 416.60Up
Male accessory glands1 00 of 4 0.40None
Virgin spermatheca3 00 of 4 0.96None
Mated spermatheca6 11 of 4 1.84None
Adult carcass2 10 of 4 0.60None
Larval CNS8 04 of 4 2.47Up
Larval Salivary gland2 00 of 4 0.78None
Larval midgut3 00 of 4 1.14None
Larval tubule3 10 of 4 1.00None
Larval hindgut2 00 of 4 0.73None
Larval fat body5 11 of 4 1.50None
Larval trachea3 12 of 4 1.03None
Larval carcass2 11 of 4 0.79None
S2 cells (growing)3 01 of 4 0.92None
Whole fly3 11 of 4



(CG3964):

Annotation Number : CG3964
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031574
Gbrowse : chr2L:3862680-3867507 (+) // 100.0 //
Probeset : 1633242_a_at
Accessions : protein= NP_608810; /// NP_722946;, nucleotide= NM_134966; /// NM_164562;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity //
FlyMine data for FBgn0031574.
BDGP gene expression has embryonic in situ data for CG3964: 24 pix of staining in 12 body parts.
VDRC has 3 RNAi stocks for FBgn0031574 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head5 10 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion6 11 of 4 0.00Down
Salivary gland5 20 of 4 0.04Down
Crop6 30 of 4 0.00Down
Midgut10 20 of 4 0.10Down
Tubule8 00 of 4 0.10Down
Hindgut7 20 of 4 0.10Down
Heart1 00 of 4 0.01Down
Fat body10 40 of 4 0.07Down
Ovary35 14 of 4 0.20Down
Testis1536 574 of 410.70Up
Male accessory glands7 10 of 4 0.10Down
Virgin spermatheca7 10 of 4 0.05Down
Mated spermatheca7 20 of 4 0.05Down
Adult carcass26 20 of 4 0.20Down
Larval CNS110 44 of 4 0.77Down
Larval Salivary gland19 23 of 4 0.13Down
Larval midgut15 21 of 4 0.10Down
Larval tubule8 00 of 4 0.10Down
Larval hindgut16 12 of 4 0.11Down
Larval fat body138 594 of 4 1.00None
Larval trachea30 114 of 4 0.21Down
Larval carcass19 32 of 4 0.14Down
S2 cells (growing)30 14 of 4 0.21Down
Whole fly144 84 of 4

Looking for CG3964-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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