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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG3972-RA through 18771 annotations produced 1 hits

Cytochrome P450 A1 (Cyp4g1):

Annotation Number : CG3972
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010019
Gbrowse : chrX:361081-363366 (-) // 100.0 //
Probeset : 1641552_at
Accessions : protein= NP_525031;, nucleotide= NM_080292;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0010019.
BDGP gene expression has embryonic in situ data for Cyp4g1: 13 pix of staining in 2 body parts.
Homophila reports that CG3972 is a close match (3e-11) to human gene CYP11B2 (NP_000489), a gene associated with Aldosterone to renin ratio raised (3);Hypoaldosteronism, congenital, due to CMO I deficiency, 203400 (3);Hypoaldosteronism, congenital, due to CMO II deficiency, 610600 (3);{Low renin hypertension, susceptibility to} (3).
BioGrid reports that CG3972 interacts with CG4194 CG8368 .
TRiP has 1 RNAi stocks for FBgn0010019 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010019 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 02 of 4 0.00Down
Head29 83 of 4 0.00Down
Eye18 44 of 4 0.00Down
Thoracicoabdominal ganglion730 7064 of 4 0.20Down
Salivary gland55 124 of 4 0.01Down
Crop154 1034 of 4 0.00Down
Midgut53 214 of 4 0.00Down
Tubule826 3274 of 4 0.20Down
Hindgut286 1384 of 4 0.10Down
Heart8845 8554 of 4 1.89Up
Fat body5857 10884 of 4 1.25None
Ovary53 64 of 4 0.00Down
Testis30 94 of 4 0.00Down
Male accessory glands75 124 of 4 0.00Down
Virgin spermatheca33 114 of 4 0.01Down
Mated spermatheca143 674 of 4 0.03Down
Adult carcass8297 4884 of 4 1.80Up
Larval CNS9 24 of 4 0.00Down
Larval Salivary gland17 23 of 4 0.00Down
Larval midgut90 294 of 4 0.02Down
Larval tubule7 10 of 4 0.00Down
Larval hindgut25 63 of 4 0.01Down
Larval fat body7 30 of 4 0.00Down
Larval trachea124 1954 of 4 0.03Down
Larval carcass3833 2124 of 4 0.82Down
S2 cells (growing)60 14 of 4 0.01Down
Whole fly4691 1564 of 4

Looking for CG3972-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime