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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3977-RA through 18771 annotations produced 1 hits



Copper transporter 1A (Ctr1A):

Annotation Number : CG3977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0062413
Gbrowse : chrX:6555679-6561084 (+) // 100.0 //
Probeset : 1629938_at
Accessions : protein= NP_572336;, nucleotide= NM_132108;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // non-traceable author statemen
Interpro : 0005375 // copper ion transmembrane transporter activity // inferred by curator /// 0005375 // copper ion transmembrane
FlyMine data for FBgn0062413.
BioGrid reports that CG3977 interacts with CG8887 CG5352 CG9894 .
VDRC has 1 RNAi stocks for FBgn0062413 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 54 of 4 1.60Up
Head80 154 of 4 1.00None
Eye66 24 of 4 0.83None
Thoracicoabdominal ganglion91 94 of 4 1.10None
Salivary gland154 84 of 4 1.94Up
Crop106 34 of 4 1.30Up
Midgut96 64 of 4 1.20None
Tubule25 04 of 4 0.30Down
Hindgut121 24 of 4 1.50Up
Heart161 144 of 4 2.02Up
Fat body57 164 of 4 0.72None
Ovary122 54 of 4 1.50Up
Testis51 34 of 4 0.60Down
Male accessory glands69 24 of 4 0.90None
Virgin spermatheca26 24 of 4 0.33Down
Mated spermatheca27 33 of 4 0.34Down
Adult carcass71 54 of 4 0.90None
Larval CNS71 164 of 4 0.89None
Larval Salivary gland32 34 of 4 0.41Down
Larval midgut63 84 of 4 0.80None
Larval tubule248 84 of 4 3.10Up
Larval hindgut56 44 of 4 0.70Down
Larval fat body104 83 of 4 1.30None
Larval trachea225 184 of 4 2.83Up
Larval carcass97 94 of 4 1.22None
S2 cells (growing)212 44 of 4 2.67Up
Whole fly79 74 of 4

Looking for CG3977-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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