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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3978-RB through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:11851818-11866638 (+) // 100.0 //):

Annotation Number : CG3978
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr3-58
Gbrowse :
Probeset : 1634370_a_at
Accessions : protein= , nucleotide=
Interpro : "0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for chr3-58.
Homophila reports that CG3978 is a close match (3e-40) to human gene ERYF1;GATA1;GF1;NFE1 (NP_002040), a gene associated with Dyserythropoietic anemia with thrombocytopenia, 300367 (3);Leukemia, megakaryoblastic, of Down syndrome, 190685 (3);Leukemia, megakaryoblastic, with or without Down syndrome, 190685 (3);Macrothrombocytopenia, 300367 (3).
BioGrid reports that CG3978 interacts with CG11937 CG4722 CG6500 CG9745 CG9885 CG1007 CG3696 CG3696 CG3758 CG32443 CG13388 CG5166 CG11166 CG12084 CG14959 CG14959 CG30497 CG31176 CG31232 CG32541 CG33174 CG4225 CG5180 CG5208 CG5720 CG6701 CG7543 CG7552 CG8051 CG8116 CG8219 CG8580 CG3924 CG3924 CG7583 CG5935 CG5935 CG12223 CG4427 CG6203 CG8938 CG2720 CG8676 CG1429 CG2078 CG11172 CG11172 CG6988 CG16788 CG5461 CG1624 CG4220 CG6575 CG13432 CG3776 CG12176 CG17334 CG2411 CG9755 CG1799 CG8544 CG10334 CG1395 CG1395 CG4122 CG13109 CG6889 CG8651 CG2762 CG4889 Dmel CG4460 CG8144 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 00 of 4 0.50Down
Head21 24 of 4 1.40None
Eye5 10 of 4 0.36Down
Thoracicoabdominal ganglion4 10 of 4 0.30Down
Salivary gland7 30 of 4 0.49None
Crop6 20 of 4 0.40Down
Midgut21 13 of 4 1.40None
Tubule2 00 of 4 0.10Down
Hindgut3 10 of 4 0.20Down
Heart87 64 of 4 5.60Up
Fat body11 40 of 4 0.70None
Ovary0 00 of 4 0.10Down
Testis4 11 of 4 0.30Down
Male accessory glands3 20 of 4 0.20Down
Virgin spermatheca594 684 of 438.02Up
Mated spermatheca696 714 of 444.58Up
Adult carcass28 23 of 4 1.80Up
Larval CNS2 10 of 4 0.18Down
Larval Salivary gland1 00 of 4 0.06Down
Larval midgut2 00 of 4 0.14Down
Larval tubule45 44 of 4 2.90Up
Larval hindgut5 10 of 4 0.36Down
Larval fat body36 74 of 4 2.30None
Larval trachea25 24 of 4 1.65Up
Larval carcass67 84 of 4 4.30Up
S2 cells (growing)705 54 of 445.17Up
Whole fly15 23 of 4

Looking for CG3978-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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