Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3986-RA through 18771 annotations produced 1 hits



Chitinase 4 (Cht4):

Annotation Number : CG3986
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022700
Gbrowse : chr2R:16952884-16954592 (-) // 100.0 //
Probeset : 1631472_at
Accessions : protein= NP_524962;, nucleotide= NM_080223;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0022700.
Homophila reports that CG3986 is a close match (5e-67) to human gene ASRT7;CHI3L1;GP39;YKL40 (NP_001267), a gene associated with {Asthma-related traits, susceptibility to, 7}, 611960 (3);{Schizophrenia, susceptiblity to}, 181500 (3).
VDRC has 3 RNAi stocks for FBgn0022700 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 22 of 4 0.10Down
Head17 ± 52 of 4 0.30Down
Eye2 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion9 ± 01 of 4 0.10Down
Salivary gland26 ± 31 of 4 0.39Down
Crop29 ± 152 of 4 0.40None
Midgut823 ± 224 of 412.30Up
Tubule67 ± 183 of 4 1.00None
Hindgut230 ± 124 of 4 3.50Up
Heart8 ± 22 of 4 0.13Down
Fat body9 ± 60 of 4 0.14Down
Ovary7 ± 00 of 4 0.10Down
Testis7 ± 10 of 4 0.10Down
Male accessory glands104 ± 304 of 4 1.60None
Virgin spermatheca9 ± 11 of 4 0.15Down
Mated spermatheca11 ± 31 of 4 0.17Down
Adult carcass16 ± 20 of 4 0.30Down
Larval CNS6 ± 10 of 4 0.10Down
Larval Salivary gland15 ± 11 of 4 0.22Down
Larval midgut730 ± 1354 of 410.94Up
Larval tubule12 ± 43 of 4 0.20Down
Larval hindgut45 ± 24 of 4 0.68None
Larval fat body13 ± 20 of 4 0.20Down
Larval trachea2 ± 10 of 4 0.03Down
Larval carcass11 ± 00 of 4 0.18Down
S2 cells (growing)8 ± 20 of 4 0.13Down
Whole fly66 ± 94 of 4

Looking for CG3986-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime